当前解析结果
SmilChr04G000637| 统一新 Gene ID | SmilChr04G000637 |
|---|---|
| 名称 | SmilChr04G000637 |
| 描述 | putative receptor protein kinase ZmPK1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7244801 - 7247585 / - |
| NCBI Gene ID | LOC131022475 |
|---|---|
| GeneID | 131022475 |
| locus_tag | - |
| NCBI Name | LOC131022475 |
| 原始查询 | LOC131022475 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor protein kinase ZmPK1 |
| 产物 | putative receptor protein kinase ZmPK1 |
| Arabidopsis | AT1G34300 (AT1G34300)lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840330] identity=32.8; qcov=0.995; evalue=7.18e-113; confidence=low |
| Rice | Os01g0668901- identity=49.9; qcov=1; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022475 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807963.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807963.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807963.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807963.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807963.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7245110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B139,B98,C18,C44 |
Chr4:7245401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B67 |
Chr4:7245477 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C58 |
Chr4:7245477 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C58 |
Chr4:7245479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr4:7245506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr4:7245524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B133,B55,C17 |
Chr4:7245614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr4:7245778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr4:7245803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B52,B67 |
Chr4:7245848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C79 |
Chr4:7245890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B52,B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807963.1PF01453
B_lectin 72-161 aa
PF00954
S_locus_glycop 247-309 aa
PF07714
PK_Tyr_Ser-Thr 509-777 aa
PF00069
Pkinase 510-775 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807963.1 |
Pfam | PF01453 |
B_lectin | Repeat | 72 | 161 | 6.3e-24 | 85.2 | D-mannose binding lectin |
XP_057807963.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 247 | 309 | 2.8e-10 | 41.4 | S-locus glycoprotein domain |
XP_057807963.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 509 | 777 | 2.8e-33 | 116.1 | Protein tyrosine and serine/threonine kinase |
XP_057807963.1 |
Pfam | PF00069 |
Pkinase | Domain | 510 | 775 | 2.1e-47 | 162.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。