当前解析结果
SmilChr04G000600| 统一新 Gene ID | SmilChr04G000600 |
|---|---|
| 名称 | SmilChr04G000600 |
| 描述 | cation/H(+) antiporter 15-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 6779158 - 6782530 / - |
| NCBI Gene ID | LOC131022476 |
|---|---|
| GeneID | 131022476 |
| locus_tag | - |
| NCBI Name | LOC131022476 |
| 原始查询 | LOC131022476 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 15-like |
| 产物 | cation/H(+) antiporter 15-like |
| Arabidopsis | AT5G22900 (CHX3)cation/H+ exchanger 3 [Source:NCBI gene (formerly Entrezgene);Acc:832354] identity=33.7; qcov=1.04; evalue=3.25e-152; confidence=low |
| Rice | Os05g0485000 (OsCHX16)- identity=33.1; qcov=1.01; evalue=4.98e-138; confidence=low |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00582 (Usp); PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022476 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807964.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807964.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807964.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807964.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807964.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:6779724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,C25 |
Chr4:6780190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C13 |
Chr4:6780218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B140,C13 |
Chr4:6780449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,C73,D10 |
Chr4:6780486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr4:6780565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:6780942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:6780993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B15,C50,C76 |
Chr4:6781202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:6781212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,D10 |
Chr4:6781230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807964.1PF00999
Na_H_Exchanger 64-436 aa
PF23256
CHX17_2nd 501-624 aa
PF23259
CHX17_C 634-777 aa
PF00582
Usp 636-744 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807964.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 64 | 436 | 1.3e-31 | 110.5 | Sodium/hydrogen exchanger, transmembrane |
XP_057807964.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 501 | 624 | 6.4e-40 | 136.9 | Plant cation/H(+) antiporter domain |
XP_057807964.1 |
Pfam | PF23259 |
CHX17_C | Domain | 634 | 777 | 4.6e-46 | 157.2 | Plant cation/H(+) antiporter, C-terminal domain |
XP_057807964.1 |
Pfam | PF00582 |
Usp | Domain | 636 | 744 | 1.6e-07 | 32.7 | Universal stress protein family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。