当前解析结果
SmilChr04G000642| 统一新 Gene ID | SmilChr04G000642 |
|---|---|
| 名称 | SmilChr04G000642 |
| 描述 | ABC transporter G family member 23 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7286563 - 7288813 / - |
| NCBI Gene ID | LOC131022479 |
|---|---|
| GeneID | 131022479 |
| locus_tag | - |
| NCBI Name | LOC131022479 |
| 原始查询 | LOC131022479 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 23 |
| 产物 | ABC transporter G family member 23 |
| Arabidopsis | AT5G19410 (ABCG23)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:832061] identity=64.6; qcov=1.02; evalue=0; confidence=high |
| Rice | Os05g0384600 (OsABCG13)- identity=53.7; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022479 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057807966.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057807966.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057807966.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057807966.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057807966.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7286736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B44,C20 |
Chr4:7286763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C23 |
Chr4:7287036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,C82 |
Chr4:7287125 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr4:7287723 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr4:7287723 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C12 |
Chr4:7287725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr4:7287837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B138,D9 |
Chr4:7287908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr4:7287975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr4:7288142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D7,D8 |
Chr4:7288197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B76,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807966.1PF00005
ABC_tran 83-236 aa
PF01061
ABC2_membrane 361-569 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807966.1 |
Pfam | PF00005 |
ABC_tran | Domain | 83 | 236 | 1.5e-28 | 100.9 | ABC transporter |
XP_057807966.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 361 | 569 | 4.3e-46 | 157.8 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。