Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000616`

染色体: Chr04 坐标: 6960044-6962334 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000616`
名称	SmilChr04G000616
描述	uncharacterized SmilChr04G000616
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	6960044 - 6962334 / `+`

ID 对照

NCBI Gene ID	`LOC131022492`
GeneID	`131022492`
locus_tag	`-`
NCBI Name	`LOC131022492`
原始查询	`LOC131022492`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=35.3; qcov=0.835; evalue=9.94e-58; confidence=medium
Rice	`Os08g0106900` - identity=39.7; qcov=0.925; evalue=4.7e-76; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:131022492

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807983.1`
2	Chromosome	染色体	0.40000	`XP_057807983.1`
3	Telomere	端粒	0.20000	`XP_057807983.1`
4	Centromere	着丝粒	0.00000	`XP_057807983.1`
5	Chromatin	染色质	0.00000	`XP_057807983.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6960860`	`A`	`AT`	1bp_insertion	frameshift_variant	23	A1,A14,A15,B101,B126,B136,B17,B38,B40,B41,B51,B63,B66,B95,C12,C23,C24,C26,C30,C50,C52,C66,C87
`Chr4:6960919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:6960931`	`AT`	`A`	1bp_deletion	frameshift_variant	22	A10,A15,A16,B11,B114,B127,B135,B136,B17,B25,B48,B58,B66,B67,B81,B88,C24,C34,C40,C46,C52,C62
`Chr4:6960934`	`AG`	`A`	1bp_deletion	frameshift_variant	10	B103,B40,B54,B85,B89,B94,C31,C63,C79,C9
`Chr4:6960936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B7,C1
`Chr4:6960962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,C18,C20,C63,C67
`Chr4:6960964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B7,C1
`Chr4:6960975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B64
`Chr4:6961033`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr4:6961082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B66,C79,D10
`Chr4:6961093`	`T`	`TTA`	2bp_insertion	frameshift_variant	24	A10,A16,B102,B117,B121,B130,B131,B136,B17,B23,B24,B33,B58,B83,B87,C17,C24,C44,C51,C58,C6,C62,C65,C9
`Chr4:6961106`	`TAA`	`T`	2bp_deletion	frameshift_variant	31	A10,A16,A7,B1,B102,B121,B127,B130,B131,B136,B17,B23,B24,B25,B33,B45,B58,B73,B83,B87,C17,C24,C43,C44,C51,C58,C6,C62,C65,C72,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807983.1

337 aa

168

337

DUF8040

DDE_Tnp_1

DDE_Tnp_4

Plant_tran

PF26138 DUF8040 19-98 aa PF01609 DDE_Tnp_1 123-290 aa PF13359 DDE_Tnp_4 130-291 aa PF04827 Plant_tran 159-293 aa

XP_057807984.1

387 aa

194

387

DUF8040

DDE_Tnp_1

DDE_Tnp_4

Plant_tran

PF26138 DUF8040 69-148 aa PF01609 DDE_Tnp_1 173-340 aa PF13359 DDE_Tnp_4 180-341 aa PF04827 Plant_tran 209-343 aa

XP_057807985.1

387 aa

194

387

DUF8040

DDE_Tnp_1

DDE_Tnp_4

Plant_tran

PF26138 DUF8040 69-148 aa PF01609 DDE_Tnp_1 173-340 aa PF13359 DDE_Tnp_4 180-341 aa PF04827 Plant_tran 209-343 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807983.1`	Pfam	`PF26138`	DUF8040	Domain	19	98	1.1e-22	80.4	Domain of unknown function (DUF8040)
`XP_057807983.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	123	290	3.7e-09	37.4	Transposase DDE domain
`XP_057807983.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	130	291	1.9e-23	83.6	DDE superfamily endonuclease
`XP_057807983.1`	Pfam	`PF04827`	Plant_tran	Family	159	293	9.1e-06	26.1	Plant transposon protein
`XP_057807984.1`	Pfam	`PF26138`	DUF8040	Domain	69	148	1.4e-22	80.1	Domain of unknown function (DUF8040)
`XP_057807984.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	173	340	4.3e-09	37.1	Transposase DDE domain
`XP_057807984.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	180	341	2.6e-23	83.1	DDE superfamily endonuclease
`XP_057807984.1`	Pfam	`PF04827`	Plant_tran	Family	209	343	1.2e-05	25.7	Plant transposon protein
`XP_057807985.1`	Pfam	`PF26138`	DUF8040	Domain	69	148	1.4e-22	80.1	Domain of unknown function (DUF8040)
`XP_057807985.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	173	340	4.3e-09	37.1	Transposase DDE domain
`XP_057807985.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	180	341	2.6e-23	83.1	DDE superfamily endonuclease
`XP_057807985.1`	Pfam	`PF04827`	Plant_tran	Family	209	343	1.2e-05	25.7	Plant transposon protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057952002.1
TTCAAAATCAATGCTTCTACAGTAATCTCAGCTAACTTTTATGATGACAGTATTGCCCTTTGAAATCCAAAATTGGAACACCAATATATCTAGCGGCATAAGCATTTTTGAAATAAAAAGCTTCTGCACTTGGGAGGGGATCTCTACAAACTTCACGTCTTTTTGATATTTGAAGAAGGTGCTGATTTGAAGCTAGGAGGACCTCAGATCTCATCCAAAAAAAGGTTAGGGCAATTCAAACAGAAGTTTTTCTGCAACCG...

XM_057952001.1
GAAGAAGGTGAGTTCTATTATTGCACCTTGAGTTATGCTTGCTGTTTTACCGGCTAAAATCTTTCATCGGAGCACGGTGTTCGTTTTTGCGAATTTTTATCTAGGGTTTTTTGAACAGGCTACGAATTAATCAGCTCAATTGCATAACTCCATTTAGAATAGCGATAATTTTTCATTTTCCAAACATTTAAACCGACTTTGTCGCTGGACCGCAGGTGCTGATTTGAAGCTAGGAGGACCTCAGATCTCATCCAAAAAAA...

CDS

3 records

下载 CDS FASTA

LOC131022492
ATGCCAACTCGACGCGACCGTGAATATTTGTTGTTGATAATAGAAGAAATTAATCGTGTGCTCCGTTGTCAGCTTATTATAATACTTGACTTGGTAATTAGGATAAAAACAAGAAAAAGAAAACGCAGCGAACATGTTGCGCGATATGGTATGATTGAATGCATACCTGCTCAGATTGGGCATTTAAACAGAATTACGGGAGTAAGTGACACCGACTGTATTTCGAATCTGCGGATGGACCGTAATACGTTTGGCAGGTT...

Protein

3 records

下载 Protein FASTA

XP_057807983.1
MIECIPAQIGHLNRITGVSDTDCISNLRMDRNTFGRLCHLLKELGGLRDDRHVCIEEQVAMFISILAHHKKNRVIGFDFWRSGQTISLYVHLVLTAILRPHALLLVKPEPVTENSTDPRWKWFKGCLGALDGTYISVMVPNGDKPRYRTRKGLISTNTLAVCDRNLKFVYVLPGWEGSAADSRVLRDTINRVHGLKVPNGNYYLVDNGYANSDGFLAPYKGVRYHLKECGPASERPRNAAELFNMRHTKARNCIERAFRI...

XP_057807984.1
MPTRRDREYLLLIIEEINRVLRCQLIIILDLVIRIKTRKRKRSEHVARYGMIECIPAQIGHLNRITGVSDTDCISNLRMDRNTFGRLCHLLKELGGLRDDRHVCIEEQVAMFISILAHHKKNRVIGFDFWRSGQTISLYVHLVLTAILRPHALLLVKPEPVTENSTDPRWKWFKGCLGALDGTYISVMVPNGDKPRYRTRKGLISTNTLAVCDRNLKFVYVLPGWEGSAADSRVLRDTINRVHGLKVPNGNYYLVDNGYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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