Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000635`

染色体: Chr04 坐标: 7211092-7214624 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000635`
名称	SmilChr04G000635
描述	(2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	7211092 - 7214624 / `-`

ID 对照

NCBI Gene ID	`LOC131022497`
GeneID	`131022497`
locus_tag	`-`
NCBI Name	`LOC131022497`
原始查询	`LOC131022497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like
产物	(2Z%2C6Z)-farnesyl diphosphate synthase CPT6%2C chloroplastic-like
Arabidopsis	`AT5G58770` (cPT4) Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835991] identity=48.4; qcov=0.772; evalue=1.71e-56; confidence=high
Rice	`Os01g0857200` - identity=41.7; qcov=0.846; evalue=3.23e-48; confidence=medium
GO	GO:0002094 (GO:0002094); GO:0009409 (response to cold); GO:0009570 (chloroplast stroma); GO:0009668 (plastid membrane organization); GO:0016094 (polyprenol biosynthetic process)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01255 (Prenyltransf)
InterPro	-
eggNOG	-
NR	GeneID:131022497

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807993.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057807994.1`
3	Cytoplasm	细胞质	0.20000	`XP_057807992.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057807992.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057807992.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:7211360`	`GAA`	`G`	2bp_deletion	frameshift_variant	79	A1,A18,A23,A3,A6,A8,B10,B111,B113,B125,B126,B128,B133,B137,B139,B140,B15,B2,B20,B25,B28,B3,B36,B41,B44,B47,B49,B51,B55,B61,B66,B68,B69,B72,B74,B75,B76,B79,B84,B86,B90,B91,B92,B98,C10,C13,C14,C17,C18,C2,C20,C21,C28,C29,C3,C30,C36,C39,C40,C41,C44,C47,C5,C52,C60,C64,C66,C71,C75,C76,C8,C80,C82,C85,C87,D3,D5,D6,D7
`Chr4:7211430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:7211446`	`G`	`A`	EMS_canonical_SNV	stop_gained	38	A3,B10,B111,B125,B140,B15,B21,B28,B36,B47,B5,B51,B59,B61,B69,B72,B84,B86,B90,B92,C14,C2,C21,C29,C3,C36,C40,C41,C47,C5,C52,C64,C71,C82,C85,C87,D3,D6
`Chr4:7211487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C10,D7
`Chr4:7211490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B76,C84
`Chr4:7211527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B139,B98,C18,C22,C44
`Chr4:7211535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C10,D7
`Chr4:7211540`	`AT`	`A`	1bp_deletion	frameshift_variant	19	A13,A18,A23,A3,B104,B128,B137,B25,B3,B51,B59,B69,C10,C13,C30,C39,C41,C75,D7
`Chr4:7211568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:7211721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B98,C18,C22,C44
`Chr4:7211844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:7214005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807992.1

312 aa

156

312

Prenyltransf

PF01255 Prenyltransf 59-236 aa

XP_057807993.1

286 aa

143

286

Prenyltransf

PF01255 Prenyltransf 59-282 aa

XP_057807994.1

241 aa

120

241

Prenyltransf

PF01255 Prenyltransf 59-234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807992.1`	Pfam	`PF01255`	Prenyltransf	Family	59	236	5.4e-48	164.1	Putative undecaprenyl diphosphate synthase
`XP_057807993.1`	Pfam	`PF01255`	Prenyltransf	Family	59	282	8.1e-73	245.3	Putative undecaprenyl diphosphate synthase
`XP_057807994.1`	Pfam	`PF01255`	Prenyltransf	Family	59	234	3e-47	161.7	Putative undecaprenyl diphosphate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057952010.1
CACCAACCTTCGTTAATAATGACACCCACCTGTTACGTTGCTATATTATTAGTAACCCAACTTCAATAAATTAAGTTTGATCTAACTTGTTTCTTTCTTGAGATAAGTAGCTAATTAATAAATAGTCTGTCAAAACAAAAAAACAAAGCTAATAAATAGAGCCTAGCTATTTCTCTGGGCAAAACTAAGACGAAAAAAAATGGTGTCATCGCTTCAGTGGAGTAGAGTTGTTCCAGCAGTATCAATGAAAGCATGGAGCA...

XM_057952011.1
TGATCTAACTTGTTTCTTTCTTGAGATAAGTAGCTAATTAATAAATAGTCTGTCAAAACAAAAAAACAAAGCTAATAAATAGAGCCTAGCTATTTCTCTGGGCAAAACTAAGACGAAAAAAAATGGTGTCATCGCTTCAGTGGAGTAGAGTTGTTCCAGCAGTATCAATGAAAGCATGGAGCACTGCAGGGAAACGAAGTGTAGAGGGGCCAAATGCTTCTTCTCCAGCCCTTGGAATTCGTAAAAAGGCGTGTTTGGCA...

CDS

3 records

下载 CDS FASTA

LOC131022497
ATGGTGTCATCGCTTCAGTGGAGTAGAGTTGTTCCAGCAGTATCAATGAAAGCATGGAGCACTGCAGGGAAACGAAGTGTAGAGGGGCCAAATGCTTCTTCTCCAGCCCTTGGAATTCGTAAAAAGGCGTGTTTGGCAGTTGGAGCAGTGATGATGCCGAAACACGTGGGTATTATAATGGACGGAAGTGGAAGGTGGGCTCAAAATAGGAACTTGCCCATCCGAGATGGCCACAGAGCCAGTTCGCAGAATCTCACAGG...

Protein

3 records

下载 Protein FASTA

XP_057807992.1
MVSSLQWSRVVPAVSMKAWSTAGKRSVEGPNASSPALGIRKKACLAVGAVMMPKHVGIIMDGSGRWAQNRNLPIRDGHRASSQNLTGLISSCCELGINTLTIFTFSKDNWKRSQMEVDILMRVFEDYIQTHLMQLVARYDIQFAAIGNKSILPKSLQNTISWAEEISKGNKGMNVVMAVSYSGRDDVVEATKNIATKVELGIIRVTDIDEIMFEQELMTNILEFPNPDLLIRTSGRGAMVNGGINFNVILVNYRVVGTFF...

XP_057807993.1
MVSSLQWSRVVPAVSMKAWSTAGKRSVEGPNASSPALGIRKKACLAVGAVMMPKHVGIIMDGSGRWAQNRNLPIRDGHRASSQNLTGLISSCCELGINTLTIFTFSKDNWKRSQMEVDILMRVFEDYIQTHLMQLVARYDIQFAAIGNKSILPKSLQNTISWAEEISKGNKGMNVVMAVSYSGRDDVVEATKNIATKVELGIIRVTDIDEIMFEQELMTNILEFPNPDLLIRTSGELRISNFLLWQLAYTEFYFVDKLFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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