Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001997`

染色体: Chr01 坐标: 35433106-35441187 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001997`
名称	SmilChr01G001997
描述	ubiquitin carboxyl-terminal hydrolase 8
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	35433106 - 35441187 / `+`

ID 对照

NCBI Gene ID	`LOC131022572`
GeneID	`131022572`
locus_tag	`-`
NCBI Name	`LOC131022572`
原始查询	`LOC131022572`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin carboxyl-terminal hydrolase 8
产物	ubiquitin carboxyl-terminal hydrolase 8
Arabidopsis	`AT5G22030` (UBP8) ubiquitin-specific protease 8 [Source:NCBI gene (formerly Entrezgene);Acc:832263] identity=61.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os07g0160000` - identity=48.5; qcov=1.04; evalue=0; confidence=high
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF25242 (Ubiquitin_UBP8)
InterPro	-
eggNOG	-
NR	GeneID:131022572

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808066.1`
2	Cytoplasm	细胞质	1.00000	`XP_057808066.1`
3	Cytosol	细胞质基质	0.60000	`XP_057808071.1`
4	Chromosome	染色体	0.00000	`XP_057808066.1`
5	Centromere	着丝粒	0.00000	`XP_057808066.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:35434989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B113,B25,C61
`Chr1:35435006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B113,B25,C61
`Chr1:35436607`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C46
`Chr1:35436607`	`TA`	`T`	1bp_deletion	CDS_variant	1	C46
`Chr1:35436803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr1:35438262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C3
`Chr1:35439400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:35439792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:35439831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C3
`Chr1:35440526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:35440847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808066.1

882 aa

441

882

Ubiquitin_UBP8

UCH

PF25242 Ubiquitin_UBP8 151-205 aa PF00443 UCH 283-876 aa

XP_057808071.1

809 aa

404

809

Ubiquitin_UBP8

UCH

PF25242 Ubiquitin_UBP8 78-132 aa PF00443 UCH 210-803 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808066.1`	Pfam	`PF25242`	Ubiquitin_UBP8	Domain	151	205	8.2e-28	96.6	UBP8-like, ubiquitin-like domain
`XP_057808066.1`	Pfam	`PF00443`	UCH	Family	283	876	2.3e-73	247.7	Ubiquitin carboxyl-terminal hydrolase
`XP_057808071.1`	Pfam	`PF25242`	Ubiquitin_UBP8	Domain	78	132	7.3e-28	96.7	UBP8-like, ubiquitin-like domain
`XP_057808071.1`	Pfam	`PF00443`	UCH	Family	210	803	1.8e-73	248.0	Ubiquitin carboxyl-terminal hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952083.1
GATATAGTAGTACTATCAATATTGAAAAAAAAAAAAAAAGTTCAAAACCAAGGAAAAGGGGCAAAAAGATTACAAAAAAACTGATTAAATAAAGCTGTGATTTAGGAATATAGTAGTAAGATTTTTGTGTTCGCAGGTAATAGTTTCTCTGCAAATCCGACAATCTCTCTCTCTCTCTCTAAAATTATGTGCGCCTCTGCAAATCTCCTCTCCCATTGCTGAGGCCGTGTCTTTCTCATTCTATAAATACATTTGCTCCG...

XM_057952088.1
TTTTTTTTCCCCCGTGGGGAAGTCTTGGAGGAATTACTGTGAAATAGTGAAGTAGCGAACAAATCTGAGTTGAAGGAAGAGGAAAGGAAGAAAATAATTGATTTGTGAAATTTACTCGAGATGGAGTTTTGCGCGTATTGGAATTGTGTCAGCGGGACTTGGTTTTAGTTTGATTGACCAAATCGGGGCAGATATGGTGGAAGGAAGCTCAGGACCCTTCATCGTCCGAGGTAAAGAGGGGGATCCCATTTGCGGCGTCC...

CDS

2 records

下载 CDS FASTA

LOC131022572
ATGGATAGCAATGATTCCGCATCCGAGATATCTTCCAGCTCTCTGCATTTGGAGCCGCGGCAGCAACAAGAGAAAGAAGAAGAGTCTGTATCTTCTGACGAAGATCAGAGCCTCTATTTAGTTCCATTCAGATGGTGGAAGGAAGCTCAGGACCCTTCATCGTCCGAGGTAAAGAGGGGGATCCCATTTGCGGCGTCCCCTGCTCCTTCTGGGGGTCCGATGAAAATTTTTAACAACATATTCAACTCAGATATTGCATT...

LOC131022572
ATGAAAATTTTTAACAACATATTCAACTCAGATATTGCATTTAGTCTGAGGAAAGAGGATGAGTTGTCTTGCAATGGAGAGAATGGAGAGAATGGTAAGGACTATGCTTTGGTGCCAGGAGAGATATGGCTTCAGACACTAAAATGGCACAGTGATTCTAAGAGTTCATCAAAGGAAAGAAAAGGGTTCTCAGTGGTCGAAGAAGATATGTCCGATGTCTACCCTTTGCAACTTAGGCTTTCTGTTCTATGTGAAACCAA...

Protein

2 records

下载 Protein FASTA

XP_057808066.1
MDSNDSASEISSSSLHLEPRQQQEKEEESVSSDEDQSLYLVPFRWWKEAQDPSSSEVKRGIPFAASPAPSGGPMKIFNNIFNSDIAFSLRKEDELSCNGENGENGKDYALVPGEIWLQTLKWHSDSKSSSKERKGFSVVEEDMSDVYPLQLRLSVLCETNVLSVKISKKDNSVECFRRACKIFNMESEPLRVWDLSGQTMLLLLNDKNKILKESQKQTDQDLLLELQVYGLSESFRNKARKDDSAQCSNGTLNGGSNYFS...

XP_057808071.1
MKIFNNIFNSDIAFSLRKEDELSCNGENGENGKDYALVPGEIWLQTLKWHSDSKSSSKERKGFSVVEEDMSDVYPLQLRLSVLCETNVLSVKISKKDNSVECFRRACKIFNMESEPLRVWDLSGQTMLLLLNDKNKILKESQKQTDQDLLLELQVYGLSESFRNKARKDDSAQCSNGTLNGGSNYFSNSARSTSSKLLGGSAEAGVLGLTGLQNLGNTCFMNSALQCLAHTPKLVDYFLGDYKREINPDNPLGMKGEIAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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