Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000709`

染色体: Chr04 坐标: 8270904-8278229 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000709`
名称	SmilChr04G000709
描述	uncharacterized SmilChr04G000709
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	8270904 - 8278229 / `+`

ID 对照

NCBI Gene ID	`LOC131022575`
GeneID	`131022575`
locus_tag	`-`
NCBI Name	`LOC131022575`
原始查询	`LOC131022575`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820061]; symbol=AT3G09080; hit=AT3G09080; species=arabidopsis; confidence=medium
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820061]; symbol=AT3G09080; hit=AT3G09080; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G09080` (AT3G09080) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820061] identity=43.9; qcov=0.929; evalue=0; confidence=medium
Rice	`Os12g0615900` (OsWD40-200) - identity=26; qcov=0.202; evalue=2.61e-06; confidence=weak
GO	GO:0005515 (protein binding); GO:0007052 (mitotic spindle organization); GO:0007346 (regulation of mitotic cell cycle); GO:0072686 (mitotic spindle)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131022575

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808064.1`
2	Cytosol	细胞质基质	0.20000	`XP_057808064.1`
3	Chromosome	染色体	0.00000	`XP_057808068.1`
4	Centromere	着丝粒	0.00000	`XP_057808068.1`
5	Chromatin	染色质	0.00000	`XP_057808068.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:8271214`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C33
`Chr4:8271214`	`GA`	`G`	1bp_deletion	CDS_variant	1	C33
`Chr4:8271294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr4:8271353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:8271979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,D4
`Chr4:8272026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr4:8272066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B48
`Chr4:8273000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:8273841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,D4
`Chr4:8273887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr4:8274262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B59,D4
`Chr4:8274429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808064.1

1139 aa

570

1139

WD40

PF00400 WD40 106-143 aa PF00400 WD40 393-423 aa PF00400 WD40 559-590 aa PF00400 WD40 694-724 aa

XP_057808065.1

1138 aa

569

1138

WD40

PF00400 WD40 106-143 aa PF00400 WD40 393-423 aa PF00400 WD40 559-590 aa PF00400 WD40 694-724 aa

XP_057808067.1

1021 aa

510

1021

WD40

PF00400 WD40 2-25 aa PF00400 WD40 275-305 aa PF00400 WD40 441-472 aa PF00400 WD40 576-606 aa

XP_057808068.1

1003 aa

502

1003

WD40

PF00400 WD40 106-143 aa PF00400 WD40 393-423 aa PF00400 WD40 559-590 aa PF00400 WD40 694-724 aa

XP_057808069.1

988 aa

494

988

WD40

PF00400 WD40 106-143 aa PF00400 WD40 393-423 aa PF00400 WD40 559-590 aa PF00400 WD40 694-724 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808064.1`	Pfam	`PF00400`	WD40	Repeat	106	143	1.7e-28	98.5	WD domain, G-beta repeat
`XP_057808064.1`	Pfam	`PF00400`	WD40	Repeat	393	423	1.7e-28	98.5	WD domain, G-beta repeat
`XP_057808064.1`	Pfam	`PF00400`	WD40	Repeat	559	590	1.7e-28	98.5	WD domain, G-beta repeat
`XP_057808064.1`	Pfam	`PF00400`	WD40	Repeat	694	724	1.7e-28	98.5	WD domain, G-beta repeat
`XP_057808065.1`	Pfam	`PF00400`	WD40	Repeat	106	143	1.7e-28	98.6	WD domain, G-beta repeat
`XP_057808065.1`	Pfam	`PF00400`	WD40	Repeat	393	423	1.7e-28	98.6	WD domain, G-beta repeat
`XP_057808065.1`	Pfam	`PF00400`	WD40	Repeat	559	590	1.7e-28	98.6	WD domain, G-beta repeat
`XP_057808065.1`	Pfam	`PF00400`	WD40	Repeat	694	724	1.7e-28	98.6	WD domain, G-beta repeat
`XP_057808067.1`	Pfam	`PF00400`	WD40	Repeat	2	25	1.9e-24	85.7	WD domain, G-beta repeat
`XP_057808067.1`	Pfam	`PF00400`	WD40	Repeat	275	305	1.9e-24	85.7	WD domain, G-beta repeat
`XP_057808067.1`	Pfam	`PF00400`	WD40	Repeat	441	472	1.9e-24	85.7	WD domain, G-beta repeat
`XP_057808067.1`	Pfam	`PF00400`	WD40	Repeat	576	606	1.9e-24	85.7	WD domain, G-beta repeat
`XP_057808068.1`	Pfam	`PF00400`	WD40	Repeat	106	143	2.8e-29	101.0	WD domain, G-beta repeat
`XP_057808068.1`	Pfam	`PF00400`	WD40	Repeat	393	423	2.8e-29	101.0	WD domain, G-beta repeat
`XP_057808068.1`	Pfam	`PF00400`	WD40	Repeat	559	590	2.8e-29	101.0	WD domain, G-beta repeat
`XP_057808068.1`	Pfam	`PF00400`	WD40	Repeat	694	724	2.8e-29	101.0	WD domain, G-beta repeat
`XP_057808069.1`	Pfam	`PF00400`	WD40	Repeat	106	143	2.5e-29	101.1	WD domain, G-beta repeat
`XP_057808069.1`	Pfam	`PF00400`	WD40	Repeat	393	423	2.5e-29	101.1	WD domain, G-beta repeat
`XP_057808069.1`	Pfam	`PF00400`	WD40	Repeat	559	590	2.5e-29	101.1	WD domain, G-beta repeat
`XP_057808069.1`	Pfam	`PF00400`	WD40	Repeat	694	724	2.5e-29	101.1	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057952081.1
AACGTACGAATTATTGTTTCTTTAATTCGCGCTGATTTCCCGCCTCTCTCTCTCTCAGCATATACATACAGAATTTACTACCACCGTGCTGCTGTGTACTATCTAGGGCTTCTCACCGGACAACATGAAACGAGGCAGAAATCGGAGCAAACCAATTGCGCCGCAAAATCTGATATTGGAGGAAGTTATTGGTTTAACTATAAAAAATGGGAATGGATTGTCGTCGAGCGTTTCAAGTTCGAAGTGCGCGTATATTGCCG...

XM_057952082.1
AACGTACGAATTATTGTTTCTTTAATTCGCGCTGATTTCCCGCCTCTCTCTCTCTCAGCATATACATACAGAATTTACTACCACCGTGCTGCTGTGTACTATCTAGGGCTTCTCACCGGACAACATGAAACGAGGCAGAAATCGGAGCAAACCAATTGCGCCGCAAAATCTGATATTGGAGGAAGTTATTGGTTTAACTATAAAAAATGGGAATGGATTGTCGTCGAGCGTTTCAAGTTCGAAGTGCGCGTATATTGCCG...

CDS

5 records

下载 CDS FASTA

LOC131022575
ATGAAACGAGGCAGAAATCGGAGCAAACCAATTGCGCCGCAAAATCTGATATTGGAGGAAGTTATTGGTTTAACTATAAAAAATGGGAATGGATTGTCGTCGAGCGTTTCAAGTTCGAAGTGCGCGTATATTGCCGGTTGTGTGGTGGTGCTGTACGATGTCGTTTCGGGCACTCAATCGCACCTAATGGCGCCGAATCGAGTTCCGAAACCATTGAGCTGCGTCGCTTTATCGAGCGACGCAGGGATTGTTGCAGCAGG...

Protein

5 records

下载 Protein FASTA

XP_057808064.1
MKRGRNRSKPIAPQNLILEEVIGLTIKNGNGLSSSVSSSKCAYIAGCVVVLYDVVSGTQSHLMAPNRVPKPLSCVALSSDAGIVAAGESGHQPAVLVWNCETLAFICEFKCHSYSVACMALSADGKYVVSAGVPRDGYICLWDWQNKVLAAKVKSSSVSSPIASIEFSIDSKFIVAAEKNQLKIWKVRWSPVSRMSTRSALLTLLRKVDLGPKDLSFVAVTSPSWKSSSSANHNQAAEPIPFYAVTNKGTLYMVCPGSPV...

XP_057808065.1
MKRGRNRSKPIAPQNLILEEVIGLTIKNGNGLSSSVSSSKCAYIAGCVVVLYDVVSGTQSHLMAPNRVPKPLSCVALSSDAGIVAAGESGHQPAVLVWNCETLAFICEFKCHSYSVACMALSADGKYVVSAGVPRDGYICLWDWQNKVLAAKVKSSSVSSPIASIEFSIDSKFIVAAEKNQLKIWKVRWSPVSRMSTRSALLTLLRKVDLGPKDLSFVAVTSPSWKSSSSANHNQAAEPIPFYAVTNKGTLYMVCPGSPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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