当前解析结果
SmilChr04G000742| 统一新 Gene ID | SmilChr04G000742 |
|---|---|
| 名称 | SmilChr04G000742 |
| 描述 | protein NRT1/ PTR FAMILY 5.5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9116065 - 9118911 / - |
| NCBI Gene ID | LOC131022596 |
|---|---|
| GeneID | 131022596 |
| locus_tag | - |
| NCBI Name | LOC131022596 |
| 原始查询 | LOC131022596 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NRT1/ PTR FAMILY 5.5-like |
| 产物 | protein NRT1/ PTR FAMILY 5.5-like |
| Arabidopsis | AT2G38100 (AT2G38100)proton-dependent oligopeptide transport (POT) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818388] identity=32.8; qcov=0.543; evalue=8.96e-31; confidence=low |
| Rice | Os01g0871500- identity=26.4; qcov=1.07; evalue=4.5e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022596 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057808088.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057808088.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057808088.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808088.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9116266 |
C |
CGT |
2bp_insertion | frameshift_variant | 67 | A14,A19,A22,A7,B100,B101,B108,B112,B117,B121,B125,B126,B128,B132,B133,B134,B136,B18,B19,B25,B27,B28,B31,B35,B36,B38,B39,B40,B42,B43,B45,B47,B5,B55,B58,B65,B67,B7,B70,B71,B77,B80,B81,B82,B87,B93,B97,C15,C17,C20,C22,C31,C32,C4,C40,C41,C52,C58,C62,C65,C68,C78,C85,D6,D7,D8,D9 |
Chr4:9116300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,C27,C55 |
Chr4:9116303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:9116345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B84 |
Chr4:9116367 |
A |
ACC |
2bp_insertion | frameshift_variant | 2 | B124,B79 |
Chr4:9116367 |
A |
ACC |
2bp_insertion | CDS_variant | 2 | B124,B79 |
Chr4:9116386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B35,B87,C13,D9 |
Chr4:9116402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:9116423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B33,C33,C74 |
Chr4:9116432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr4:9116437 |
C |
CCT |
2bp_insertion | frameshift_variant | 53 | A11,A15,A2,A20,A8,A9,B10,B103,B12,B124,B133,B137,B16,B19,B28,B32,B34,B4,B46,B5,B50,B54,B55,B76,B77,B79,B86,B94,B95,C1,C12,C17,C19,C20,C25,C31,C34,C35,C37,C39,C4,C45,C46,C53,C54,C60,C63,C72,C74,C83,D1,D6,D8 |
Chr4:9116440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B33,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。