Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000830`

染色体: Chr04 坐标: 10452131-10455791 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000830`
名称	SmilChr04G000830
描述	transcription factor bHLH140
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	10452131 - 10455791 / `-`

ID 对照

NCBI Gene ID	`LOC131022668`
GeneID	`131022668`
locus_tag	`-`
NCBI Name	`LOC131022668`
原始查询	`LOC131022668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH140
产物	transcription factor bHLH140
Arabidopsis	`AT5G01310` (APTX) APRATAXIN-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830940] identity=58.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0293400` - identity=55.8; qcov=0.631; evalue=3.01e-147; confidence=high
GO	GO:0000012 (single strand break repair); GO:0003697 (single-stranded DNA binding); GO:0003725 (double-stranded RNA binding); GO:0005634 (nucleus); GO:0006302 (double-strand break repair); GO:0030983 (mismatched DNA binding); GO:0033699 (DNA 5'-adenosine monophosphate hydrolase activity); GO:1990165 (single-strand break-containing DNA binding)
KEGG	smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF01230 (HIT); PF01661 (Macro); PF11969 (DcpS_C); PF13671 (AAA_33); PF16278 (zf-C2HE)
InterPro	-
eggNOG	-
NR	GeneID:131022668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808167.1`
2	Cytosol	细胞质基质	1.00000	`XP_057808168.1`
3	Cytoplasm	细胞质	0.80000	`XP_057808168.1`
4	Nucleoplasm	核质	0.40000	`XP_057808167.1`
5	Nuclear body	核内小体	0.20000	`XP_057808167.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:10452379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr4:10452383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,D11
`Chr4:10453267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,D11
`Chr4:10453510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:10453737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:10454057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:10454198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C79
`Chr4:10454414`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B10,B30,C3,C44
`Chr4:10454414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B30,C3,C44
`Chr4:10454777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C79
`Chr4:10454783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr4:10455452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808167.1

687 aa

344

687

AAA_33

Macro

DcpS_C

HIT

zf-C2HE

PF13671 AAA_33 26-133 aa PF01661 Macro 357-434 aa PF11969 DcpS_C 495-607 aa PF01230 HIT 506-596 aa PF16278 zf-C2HE 612-665 aa

XP_057808168.1

616 aa

308

616

Macro

DcpS_C

HIT

zf-C2HE

PF01661 Macro 286-363 aa PF11969 DcpS_C 424-536 aa PF01230 HIT 435-525 aa PF16278 zf-C2HE 541-594 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808167.1`	Pfam	`PF13671`	AAA_33	Domain	26	133	5.3e-10	40.5	AAA domain
`XP_057808167.1`	Pfam	`PF01661`	Macro	Domain	357	434	1.5e-09	38.5	Macro domain
`XP_057808167.1`	Pfam	`PF11969`	DcpS_C	Family	495	607	7.7e-27	94.7	Scavenger mRNA decapping enzyme C-term binding
`XP_057808167.1`	Pfam	`PF01230`	HIT	Domain	506	596	3.7e-06	28.2	HIT domain
`XP_057808167.1`	Pfam	`PF16278`	zf-C2HE	Domain	612	665	4.5e-11	43.7	C2HE / C2H2 / C2HC zinc-binding finger
`XP_057808168.1`	Pfam	`PF01661`	Macro	Domain	286	363	1.2e-09	38.9	Macro domain
`XP_057808168.1`	Pfam	`PF11969`	DcpS_C	Family	424	536	6.4e-27	95.0	Scavenger mRNA decapping enzyme C-term binding
`XP_057808168.1`	Pfam	`PF01230`	HIT	Domain	435	525	3.1e-06	28.5	HIT domain
`XP_057808168.1`	Pfam	`PF16278`	zf-C2HE	Domain	541	594	3.8e-11	43.9	C2HE / C2H2 / C2HC zinc-binding finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952185.1
GAAAGTAGTGAAGCAGAAACGTCGTCGTTTCCACGCTTTATAAAAGCGTGTTTACCGTGTTGTGTTTAACAACGCTTTGGCTTCTGTTGGCGGAGATCAAGAATGGAATCAGTGGAAATTGATCGAGGAGAAACTATGTCTGAAGGAGGAAAGGGAAAAGAATTGAAGCAAATCATAGTAGTATTAATGGGTCTGCCGGGAAGTGGAAAATCAACCTTTTGCGAGGAAGTGGCGAAGATTTCTTGCCGCCCATGGGTCCG...

XM_057952184.1
GTAGTGAAGCAGAAACGTCGTCGTTTCCACGCTTTATAAAAGCGTGTTTACCGTGTTGTGTTTAACAACGCTTTGGCTTCTGTTGGCGGAGATCAAGAATGGAATCAGTGGAAATTGATCGAGGAGAAACTATGTCTGAAGGAGGAAAGGGAAAAGAATTGAAGCAAATCATAGTAGTATTAATGGGTCTGCCGGGAAGTGGAAAATCAACCTTTTGCGAGGAAGTGGCGAAGATTTCTTGCCGCCCATGGGTCCGCGTT...

CDS

2 records

下载 CDS FASTA

LOC131022668
ATGGAATCAGTGGAAATTGATCGAGGAGAAACTATGTCTGAAGGAGGAAAGGGAAAAGAATTGAAGCAAATCATAGTAGTATTAATGGGTCTGCCGGGAAGTGGAAAATCAACCTTTTGCGAGGAAGTGGCGAAGATTTCTTGCCGCCCATGGGTCCGCGTTTGCCAGGATTCAATCAATAATGGTAAAGCTGGGACAAAAAACCAGTGTTTATCTGTTGCAGCTAATGCTTTGAAGGGTGGTAAGAGCGTGTTGATAGA...

LOC131022668
ATGGGTCCGCGTTTGCCAGGTAGACCTACATCGCACATTACACCGTTGTTATCTGCTGAAAGAAGGGAGCAGAGGGCAGAGTTTCTGAAACTTGGTGGTCCAGAAACAGAGAAACATGTTGTGGTGCTTGATCTACTGCCCACGCTTTGTATCTCTCGTTCCGTGAAGCGTACTGGGCATGAGGGCAACTTACAAGGCGGTAGAGCAGCTGCAGTTGTGAATCACATGGTGCCGAAGAAGGAACTCCCTAAACTGAGTGA...

Protein

2 records

下载 Protein FASTA

XP_057808167.1
MESVEIDRGETMSEGGKGKELKQIIVVLMGLPGSGKSTFCEEVAKISCRPWVRVCQDSINNGKAGTKNQCLSVAANALKGGKSVLIDRCNIDREQRAEFLKLGGPETEKHVVVLDLLPTLCISRSVKRTGHEGNLQGGRAAAVVNHMVPKKELPKLSEGFDRIMFCYNEKDVKEAINLYGSLTLDDSLPSGCFGQKSSNSTVQVGIMKFFKKGDASGNAKSVAKDSGNQGAKTGSHTACDALQKMREGGELDMTSTSGST...

XP_057808168.1
MGPRLPGRPTSHITPLLSAERREQRAEFLKLGGPETEKHVVVLDLLPTLCISRSVKRTGHEGNLQGGRAAAVVNHMVPKKELPKLSEGFDRIMFCYNEKDVKEAINLYGSLTLDDSLPSGCFGQKSSNSTVQVGIMKFFKKGDASGNAKSVAKDSGNQGAKTGSHTACDALQKMREGGELDMTSTSGSTASGSIPTLAFPSISTADFQFDLEKASNIIVEKVEEYIGRIGKGKLVLVDLSRGSKILSLVETKAAKKNIDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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