Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000875`

染色体: Chr04 坐标: 11111329-11115198 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000875`
名称	SmilChr04G000875
描述	protein trichome birefringence-like 34
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11111329 - 11115198 / `+`

ID 对照

NCBI Gene ID	`LOC131022702`
GeneID	`131022702`
locus_tag	`-`
NCBI Name	`LOC131022702`
原始查询	`LOC131022702`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 34
产物	protein trichome birefringence-like 34
Arabidopsis	`AT2G38320` (TBL34) TRICHOME BIREFRINGENCE-LIKE 34 [Source:NCBI gene (formerly Entrezgene);Acc:818412] identity=56; qcov=1.15; evalue=8.54e-164; confidence=high
Rice	`Os12g0106300` (OsTBL1) - identity=49.3; qcov=1.02; evalue=1.54e-119; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131022702

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057808200.1`
2	Nucleus	细胞核	0.00000	`XP_057808200.1`
3	Chromosome	染色体	0.00000	`XP_057808200.1`
4	Centromere	着丝粒	0.00000	`XP_057808200.1`
5	Chromatin	染色质	0.00000	`XP_057808200.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11111571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B108,B27,C43
`Chr4:11111646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,C79
`Chr4:11111693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,C80,D5
`Chr4:11111872`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B97
`Chr4:11111872`	`AC`	`A`	1bp_deletion	CDS_variant	1	B97
`Chr4:11113489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B54,C23
`Chr4:11113514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B30,C3
`Chr4:11113515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:11113591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,B23,B79
`Chr4:11113598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,D10
`Chr4:11113608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:11113984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808200.1

408 aa

204

408

PMR5N

PC-Esterase

PF14416 PMR5N 57-110 aa PF13839 PC-Esterase 111-400 aa

XP_057808201.1

355 aa

178

355

PMR5N

PC-Esterase

PF14416 PMR5N 57-110 aa PF13839 PC-Esterase 111-235 aa PF13839 PC-Esterase 240-347 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808200.1`	Pfam	`PF14416`	PMR5N	Domain	57	110	2.2e-23	83.0	PMR5 N terminal Domain
`XP_057808200.1`	Pfam	`PF13839`	PC-Esterase	Family	111	400	4.2e-92	309.8	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057808201.1`	Pfam	`PF14416`	PMR5N	Domain	57	110	1.8e-23	83.3	PMR5 N terminal Domain
`XP_057808201.1`	Pfam	`PF13839`	PC-Esterase	Family	111	235	1.9e-71	242.0	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057808201.1`	Pfam	`PF13839`	PC-Esterase	Family	240	347	1.9e-71	242.0	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952217.1
TATTAGTTTAAATTAAAAGGCTAAAGCAACTATCAACTAGAAAGAAAAGCAAGCAACAACTAGGAAAAAAATATGGATTCCACTAAAGCAGCAGAGATATATCCATTCCATCCTAACAAATCCCGAAAGCTCAAGACGACCTAATTTCTGACATGCACAAACAAAATAAAAAACCCTAGACATAAACCTAGGCCCCAATCGAAGAAAGCTAAATCATGGCTAAGAAAGGCAATTTCTCCTCTGATTATCTGACGGTGGAT...

XM_057952218.1
CAACTAGAAAGAAAAGCAAGCAACAACTAGGAAAAAAATATGGATTCCACTAAAGCAGCAGAGATATATCCATTCCATCCTAACAAATCCCGAAAGCTCAAGACGACCTAATTTCTGACATGCACAAACAAAATAAAAAACCCTAGACATAAACCTAGGCCCCAATCGAAGAAAGCTAAATCATGGCTAAGAAAGGCAATTTCTCCTCTGATTATCTGACGGTGGATGTGCGGTGCAGTTTCAAGACGCTGGTGGTGCTC...

CDS

2 records

下载 CDS FASTA

LOC131022702
ATGGCTAAGAAAGGCAATTTCTCCTCTGATTATCTGACGGTGGATGTGCGGTGCAGTTTCAAGACGCTGGTGGTGCTCCTCGTGGCGGTGCTGGTGGTCGGGGCCGTTTATCTGACGGCGGAGGGCGGCTACCTCGTGCAAGGCGGCGCGGCGGCGGCAGAGAATTCCGGCTGCGATTTGTTTTCCGGGAGATGGGTTTACGACAACGAGTCGTATCCGTTGTATAAGGAGGAGGAATGCACGTTCATGTCGGATCAATT...

Protein

2 records

下载 Protein FASTA

XP_057808200.1
MAKKGNFSSDYLTVDVRCSFKTLVVLLVAVLVVGAVYLTAEGGYLVQGGAAAAENSGCDLFSGRWVYDNESYPLYKEEECTFMSDQLACGKFGRADSSYQHWRWQPHHCDLPRLNATALLERLRNKRLVFVGDSLNRGQWVSMVCLLDKAIPRGRKYMHNNGSALITFKAKDYNAKIEFYWAPLLVESNSDDPVSHRLPDRIVRAQAIEKHARHWSDADILVFNTYLWWRRPQMKVLWGSFNSSDGIYKKIEMLRSYEMA...

XP_057808201.1
MAKKGNFSSDYLTVDVRCSFKTLVVLLVAVLVVGAVYLTAEGGYLVQGGAAAAENSGCDLFSGRWVYDNESYPLYKEEECTFMSDQLACGKFGRADSSYQHWRWQPHHCDLPRLNATALLERLRNKRLVFVGDSLNRGQWVSMVCLLDKAIPRGRKYMHNNGSALITFKAKDYNAKIEFYWAPLLVESNSDDPVSHRLPDRIVRAQAIEKHARHWSDADILVFNTYLWWRRPQMKVLAEEWRRSKGENCYSETDMISKEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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