Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000878`

染色体: Chr04 坐标: 11131860-11135369 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000878`
名称	SmilChr04G000878
描述	protein trichome birefringence-like 34
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11131860 - 11135369 / `+`

ID 对照

NCBI Gene ID	`LOC131022703`
GeneID	`131022703`
locus_tag	`-`
NCBI Name	`LOC131022703`
原始查询	`LOC131022703`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 34
产物	protein trichome birefringence-like 34
Arabidopsis	`AT2G38320` (TBL34) TRICHOME BIREFRINGENCE-LIKE 34 [Source:NCBI gene (formerly Entrezgene);Acc:818412] identity=47.2; qcov=0.907; evalue=4.61e-89; confidence=high
Rice	`Os03g0817500` (OsTBL3) - identity=48.2; qcov=0.821; evalue=1.36e-83; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131022703

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057808202.1`
2	Secreted	分泌到胞外	0.20000	`XP_057808203.1`
3	Nucleus	细胞核	0.00000	`XP_057808202.1`
4	Chromosome	染色体	0.00000	`XP_057808202.1`
5	Centromere	着丝粒	0.00000	`XP_057808202.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11132025`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D7
`Chr4:11132025`	`TG`	`T`	1bp_deletion	CDS_variant	1	D7
`Chr4:11132112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B52
`Chr4:11132148`	`C`	`CG`	1bp_insertion	frameshift_variant	20	A14,A19,A6,B112,B117,B136,B45,B7,B72,B80,B97,C20,C28,C3,C38,C40,C6,C73,C81,C84
`Chr4:11132182`	`TGA`	`T`	2bp_deletion	frameshift_variant	22	A15,A2,A20,A5,B103,B135,B138,B22,B48,B60,B67,B9,C1,C13,C39,C4,C58,C63,C72,C75,D7,D8
`Chr4:11132187`	`A`	`AGC`	2bp_insertion	frameshift_variant	22	A15,A2,A20,A5,B103,B135,B138,B22,B48,B60,B67,B9,C1,C13,C39,C4,C58,C63,C72,C75,D7,D8
`Chr4:11132191`	`GT`	`G`	1bp_deletion	frameshift_variant	22	A15,A2,A20,A5,B103,B135,B138,B22,B48,B60,B67,B9,C1,C13,C39,C4,C58,C63,C72,C75,D7,D8
`Chr4:11132277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B67,C39,C75,D7
`Chr4:11132313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B131,B41
`Chr4:11132475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:11132504`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B132,B58
`Chr4:11132504`	`GC`	`G`	1bp_deletion	CDS_variant	2	B132,B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808202.1

393 aa

196

393

PMR5N

PC-Esterase

PF14416 PMR5N 50-102 aa PF13839 PC-Esterase 103-388 aa

XP_057808203.1

301 aa

150

301

PMR5N

PC-Esterase

PF14416 PMR5N 50-102 aa PF13839 PC-Esterase 103-291 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808202.1`	Pfam	`PF14416`	PMR5N	Domain	50	102	9.8e-20	71.4	PMR5 N terminal Domain
`XP_057808202.1`	Pfam	`PF13839`	PC-Esterase	Family	103	388	7.7e-83	279.4	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057808203.1`	Pfam	`PF14416`	PMR5N	Domain	50	102	6.9e-20	71.8	PMR5 N terminal Domain
`XP_057808203.1`	Pfam	`PF13839`	PC-Esterase	Family	103	291	4e-49	168.8	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009101393.1
ATTAAAAAAGTGGCATGCAACTAGAAATTCTTGGTTTGCTTGCTCTGGATCTGACACAAGACAAACAGAAATAATGAAACATGAAAAAATGAAAATGGGAATGCTCTCGCACTGCATTCTTGGCTTCTCTCTCTTGATTTTAGCCGGCGCCGTTTTCTATCTGACCGGAAACGAAGTACCGACATTGAACGAGGTCAATTCGAGTCCGAGTTCGAGTTCAAGCTGCAACTTGTTTGAAGGAAGATGGATTTTTGACAATG...

XM_057952220.1
ATTCTCGCAAATAATGCAAGAAACCATGTGAAATTACTAGGATAAAGCACAAACCATGTGAAATAAATTAATTAAAAAAGTGGCATGCAACTAGAAATTCTTGGTTTGCTTGCTCTGGATCTGACACAAGACAAACAGAAATAATGAAACATGAAAAAATGAAAATGGGAATGCTCTCGCACTGCATTCTTGGCTTCTCTCTCTTGATTTTAGCCGGCGCCGTTTTCTATCTGACCGGAAACGAAGTACCGACATTGAAC...

CDS

2 records

下载 CDS FASTA

LOC131022703
ATGAAACATGAAAAAATGAAAATGGGAATGCTCTCGCACTGCATTCTTGGCTTCTCTCTCTTGATTTTAGCCGGCGCCGTTTTCTATCTGACCGGAAACGAAGTACCGACATTGAACGAGGTCAATTCGAGTCCGAGTTCGAGTTCAAGCTGCAACTTGTTTGAAGGAAGATGGATTTTTGACAATGTGTCACTTCCTTTCTACGAGGAGAAGTGTTCGTTTATGTTGGCTGAGTTTGCGTGTGAGGCATACGGTAGAAA...

Protein

2 records

下载 Protein FASTA

XP_057808202.1
MKHEKMKMGMLSHCILGFSLLILAGAVFYLTGNEVPTLNEVNSSPSSSSSCNLFEGRWIFDNVSLPFYEEKCSFMLAEFACEAYGRKDLKYRNWRWQPHHCDLPRFNGTKFLEKIRGKRLMFVGDSLSRNQWTSMLCLIESALGPSSPRTVVRDENMRSFHSNEYNATIGLYWSPFMVESSCDDPLIHRVKERVIRLMSIDKHARHWNDANILIFNSYLWWADPITIVWGTSDARNKTVDKMSTRLYEMVLDIWSDWLEI...

XP_057808203.1
MKHEKMKMGMLSHCILGFSLLILAGAVFYLTGNEVPTLNEVNSSPSSSSSCNLFEGRWIFDNVSLPFYEEKCSFMLAEFACEAYGRKDLKYRNWRWQPHHCDLPRFNGTKFLEKIRGKRLMFVGDSLSRNQWTSMLCLIESALGPSSPRTVVRDENMRSFHSNEYNATIGLYWSPFMVESSCDDPLIHRVKERVIRLMSIDKHARHWNDANILIFNSYLWWADPITIVWGTSDARNKTVDKMSTRLYEMVLDIWSDWLEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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