Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000904`

染色体: Chr04 坐标: 11781730-11785099 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000904`
名称	SmilChr04G000904
描述	protein HEAT STRESS TOLERANT DWD 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11781730 - 11785099 / `-`

ID 对照

NCBI Gene ID	`LOC131022729`
GeneID	`131022729`
locus_tag	`-`
NCBI Name	`LOC131022729`
原始查询	`LOC131022729`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein HEAT STRESS TOLERANT DWD 1-like
产物	protein HEAT STRESS TOLERANT DWD 1-like
Arabidopsis	`AT2G19540` (AT2G19540) Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:816473] identity=71.4; qcov=0.904; evalue=0; confidence=high
Rice	`Os11g0134500` (OsWD40-182) - identity=66.8; qcov=0.902; evalue=4.26e-180; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF12265 (CAF1C_H4-bd)
InterPro	-
eggNOG	-
NR	GeneID:131022729

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808226.1`
2	Nucleoplasm	核质	1.00000	`XP_057808226.1`
3	Cytosol	细胞质基质	0.80000	`XP_057808228.1`
4	Chromosome	染色体	0.40000	`XP_057808227.1`
5	Cytoplasm	细胞质	0.40000	`XP_057808228.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11782197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B83,C2,C59,D6
`Chr4:11782202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr4:11782237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B84,D7,D8
`Chr4:11782383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:11782579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:11782584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B84,D7,D8
`Chr4:11782589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:11782611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B84,D7,D8
`Chr4:11782723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B25,B79,C84
`Chr4:11783020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B17,C45
`Chr4:11783021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:11783168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808226.1

479 aa

240

479

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 48-113 aa PF00400 WD40 270-309 aa PF00400 WD40 318-351 aa PF00400 WD40 364-400 aa

XP_057808227.1

473 aa

236

473

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 48-113 aa PF00400 WD40 270-303 aa PF00400 WD40 312-345 aa PF00400 WD40 358-394 aa

XP_057808228.1

418 aa

209

418

WD40

PF00400 WD40 209-248 aa PF00400 WD40 257-290 aa PF00400 WD40 303-339 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808226.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	48	113	7e-12	46.1	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057808226.1`	Pfam	`PF00400`	WD40	Repeat	270	309	3.1e-17	62.9	WD domain, G-beta repeat
`XP_057808226.1`	Pfam	`PF00400`	WD40	Repeat	318	351	3.1e-17	62.9	WD domain, G-beta repeat
`XP_057808226.1`	Pfam	`PF00400`	WD40	Repeat	364	400	3.1e-17	62.9	WD domain, G-beta repeat
`XP_057808227.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	48	113	6.3e-12	46.3	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057808227.1`	Pfam	`PF00400`	WD40	Repeat	270	303	3e-19	69.3	WD domain, G-beta repeat
`XP_057808227.1`	Pfam	`PF00400`	WD40	Repeat	312	345	3e-19	69.3	WD domain, G-beta repeat
`XP_057808227.1`	Pfam	`PF00400`	WD40	Repeat	358	394	3e-19	69.3	WD domain, G-beta repeat
`XP_057808228.1`	Pfam	`PF00400`	WD40	Repeat	209	248	1.4e-17	64.1	WD domain, G-beta repeat
`XP_057808228.1`	Pfam	`PF00400`	WD40	Repeat	257	290	1.4e-17	64.1	WD domain, G-beta repeat
`XP_057808228.1`	Pfam	`PF00400`	WD40	Repeat	303	339	1.4e-17	64.1	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057952244.1
TTCTCTACATTACTAATTTACTATAACTGCGATAAACCCTAATTGCAAAACCCTTTGCAAATCCTGTTTCTCCTCAACTCTCCTCCATTGTCCGAATCCTCCAAATTCAGAAATGGTTCGGAGCTTGAAGAATCCCAAAAAGGCGAAACGCAAAACCAAGGGCTCGAAGAAAGATGAAGGATCATCATCGAATTCGGGGCCGACGGTGCCGGCGAAAGTGTGGCAGCCGGGCGTAGACGCACTGGAGGAGGGAGAGGAGC...

XM_057952243.1
CATTACTAATTTACTATAACTGCGATAAACCCTAATTGCAAAACCCTTTGCAAATCCTGTTTCTCCTCAACTCTCCTCCATTGTCCGAATCCTCCAAATTCAGAAATGGTTCGGAGCTTGAAGAATCCCAAAAAGGCGAAACGCAAAACCAAGGGCTCGAAGAAAGATGAAGGATCATCATCGAATTCGGGGCCGACGGTGCCGGCGAAAGTGTGGCAGCCGGGCGTAGACGCACTGGAGGAGGGAGAGGAGCTTCAGTG...

CDS

3 records

下载 CDS FASTA

LOC131022729
ATGGTTCGGAGCTTGAAGAATCCCAAAAAGGCGAAACGCAAAACCAAGGGCTCGAAGAAAGATGAAGGATCATCATCGAATTCGGGGCCGACGGTGCCGGCGAAAGTGTGGCAGCCGGGCGTAGACGCACTGGAGGAGGGAGAGGAGCTTCAGTGCGACCTCTCTGCTTACAATTCTTATCATGGTTTTCACATTGGATGGCCTTGTTTGAGTTTTGATATTCTGCGCGATTCCTTGGGCTTGGTGCGCACTGAGTTTCC...

Protein

3 records

下载 Protein FASTA

XP_057808226.1
MVRSLKNPKKAKRKTKGSKKDEGSSSNSGPTVPAKVWQPGVDALEEGEELQCDLSAYNSYHGFHIGWPCLSFDILRDSLGLVRTEFPHTIYSVAGTQAEKSSWNYIGIFKILNISGKRRDLVPKKSNSEDTDMESDSSDSDEDDEEEGGTKTPVLQVRKVSHEGGVNRIRAMAQHPHICASWADTGLVQVWDFSSHLHALGEADAATNNGGSTVFNQAPLVKFAGHKDEGYAIDWSPVVPGRLVSGDCKNHIHLWEPASE...

XP_057808227.1
MVRSLKNPKKAKRKTKGSKKDEGSSSNSGPTVPAKVWQPGVDALEEGEELQCDLSAYNSYHGFHIGWPCLSFDILRDSLGLVRTEFPHTIYSVAGTQAEKSSWNYIGIFKILNISGKRRDLVPKKSNSEDTDMESDSSDSDEDDEEEGGTKTPVLQVRKVSHEGGVNRIRAMAQHPHICASWADTGLVQVWDFSSHLHALGEADAATNNGGSTVFNQAPLVKFAGHKDEGYAIDWSPVVPGRLVSGDCKNHIHLWEPASE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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