当前解析结果
SmilChr04G000911| 统一新 Gene ID | SmilChr04G000911 |
|---|---|
| 名称 | SmilChr04G000911 |
| 描述 | uncharacterized SmilChr04G000911 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11855592 - 11857645 / - |
| NCBI Gene ID | LOC131022735 |
|---|---|
| GeneID | 131022735 |
| locus_tag | - |
| NCBI Name | LOC131022735 |
| 原始查询 | LOC131022735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426]; symbol=AT2G38450; hit=AT2G38450; species=arabidopsis; confidence=medium |
| 产物 | Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426]; symbol=AT2G38450; hit=AT2G38450; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G38450 (AT2G38450)Sel1 repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:818426] identity=74.4; qcov=0.626; evalue=2.55e-43; confidence=medium |
| Rice | Os05g0342900- identity=69.3; qcov=0.672; evalue=2.06e-40; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022735 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808236.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808236.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808236.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808236.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11856890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B38,B60,B83 |
Chr4:11856894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr4:11856899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B97,C28,C79 |
Chr4:11857057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C8 |
Chr4:11857073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:11857080 |
TCC |
T |
2bp_deletion | frameshift_variant | 3 | A24,A5,B70 |
Chr4:11857080 |
TCC |
T |
2bp_deletion | CDS_variant | 3 | A24,A5,B70 |
Chr4:11857086 |
A |
AAC |
2bp_insertion | frameshift_variant | 3 | A24,A5,B70 |
Chr4:11857086 |
A |
AAC |
2bp_insertion | CDS_variant | 3 | A24,A5,B70 |
Chr4:11857349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:11857369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr4:11857399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B65,B77,C39,C75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。