Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002015`

染色体: Chr01 坐标: 35712868-35716261 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002015`
名称	SmilChr01G002015
描述	uncharacterized SmilChr01G002015
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	35712868 - 35716261 / `-`

ID 对照

NCBI Gene ID	`LOC131022769`
GeneID	`131022769`
locus_tag	`-`
NCBI Name	`LOC131022769`
原始查询	`LOC131022769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0749500; species=rice; confidence=high
产物	hit=Os03g0749500; species=rice; confidence=high
Arabidopsis	`AT5G04885` (AT5G04885) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368] identity=65.4; qcov=0.981; evalue=0; confidence=high
Rice	`Os03g0749500` - identity=66.6; qcov=0.983; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:131022769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057808276.1`
2	Cytoplasm	细胞质	0.20000	`XP_057808281.1`
3	Cytosol	细胞质基质	0.20000	`XP_057808281.1`
4	Nucleus	细胞核	0.00000	`XP_057808276.1`
5	Chromosome	染色体	0.00000	`XP_057808276.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:35713291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B127,B62,C30,C60
`Chr1:35713374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:35713476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:35713531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr1:35713624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr1:35713647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B46,C51,C75
`Chr1:35713648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:35714239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C61
`Chr1:35714330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:35714608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:35714675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr1:35714842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B90,B92,C48,C69,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808276.1

625 aa

312

625

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 40-368 aa PF01915 Glyco_hydro_3_C 405-613 aa

XP_057808281.1

539 aa

270

539

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 6-282 aa PF01915 Glyco_hydro_3_C 319-527 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808276.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	40	368	2.8e-68	231.4	Glycosyl hydrolase family 3 N terminal domain
`XP_057808276.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	405	613	1.1e-39	137.2	Glycosyl hydrolase family 3 C-terminal domain
`XP_057808281.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	6	282	2.5e-61	208.6	Glycosyl hydrolase family 3 N terminal domain
`XP_057808281.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	319	527	8e-40	137.7	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952293.1
AGAGAGAACCTTTGGACCCCTTTAATTAGCTGCAATTCTGCATGCATATAAATTGCCAATTTCACTATCCACAACACACACACACATCAAATTTGATCGTTAAAACAGACACACATGGAGTTCAACGAAATCTCACCCCAGATATTCGCAGCAAACAAGAATTTCTCAATTTATACGCATCTCTACACCCATTTTCCTTCGTAGTTATTGTTTTTGTTACCAATCATAAAATCATTGGTAGAATTAATGGATTCGTGAAG...

XM_057952298.1
CATACAATGACCCTCAGCAGCCATTAGACGCAAGAATCAATGATTTGATGAGTCGAATGACACTCGCGGAAAAAATAGGGCAGATGACACAGATTTCAAAAGGAGTAGCATCACCTGAGATCATCAAGAAGCACCACATTGCATCTTGATCACTCCAGGAGGCGAGCCGTCTCCACATGCCTCAGCAGAGGCATGGATGGATATGGCAGACAGTCTTCAAGAGGGCTCCCTCTCTGATCGCCTCGGGATCCCTCTCATCA...

CDS

2 records

下载 CDS FASTA

LOC131022769
ATGGTGCATTTGTTGCTGTTTTACTTCTTGTTTGCGGCTGCAGAGGCAGAGCATCTCACATACAATGACCCTCAGCAGCCATTAGACGCAAGAATCAATGATTTGATGAGTCGAATGACACTCGCGGAAAAAATAGGGCAGATGACACAGATTTCAAAAGGAGTAGCATCACCTGAGATCATCAAGAAGCACCACATTGGCAGCATCTTGATCACTCCAGGAGGCGAGCCGTCTCCACATGCCTCAGCAGAGGCATGGAT...

LOC131022769
ATGGATATGGCAGACAGTCTTCAAGAGGGCTCCCTCTCTGATCGCCTCGGGATCCCTCTCATCATAGGCGTCGACGCAATTCACGGCCACAACAACGCCTACAACGCCACCATCTTCCCCCATAATGTTGGCCTTGGAGCTACTAGGGACCCGCGGCTCGTGGAGAGGATCGGAGCTGCAACTGCTCTCGAAGTTAGGGCTACCGGGATCCCCTACACGTTTGCACCTTGCATCGCGGTTTGTCGTGATCCGAGGTGGGG...

Protein

2 records

下载 Protein FASTA

XP_057808276.1
MVHLLLFYFLFAAAEAEHLTYNDPQQPLDARINDLMSRMTLAEKIGQMTQISKGVASPEIIKKHHIGSILITPGGEPSPHASAEAWMDMADSLQEGSLSDRLGIPLIIGVDAIHGHNNAYNATIFPHNVGLGATRDPRLVERIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQEMTEIIPGLQGRLPAEHQRNFPYVNGRGKIAACAKHFVGDGGTIDGIDEYNTVIDWDGLRSIHMPAYLDSIRK...

XP_057808281.1
MDMADSLQEGSLSDRLGIPLIIGVDAIHGHNNAYNATIFPHNVGLGATRDPRLVERIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHRIVQEMTEIIPGLQGRLPAEHQRNFPYVNGRGKIAACAKHFVGDGGTIDGIDEYNTVIDWDGLRSIHMPAYLDSIRKGVATIMISYSSWNGKKMHTNYDLITGYLKNKLKFKGFVISDSEGLDRITTPPRANYTYSVEASIHAGIDMVMVPYTYLEFIEELTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器