Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000954`

染色体: Chr04 坐标: 12623507-12626374 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000954`
名称	SmilChr04G000954
描述	transcription factor SCREAM2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	12623507 - 12626374 / `+`

ID 对照

NCBI Gene ID	`LOC131022772`
GeneID	`131022772`
locus_tag	`-`
NCBI Name	`LOC131022772`
原始查询	`LOC131022772`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor SCREAM2-like
产物	transcription factor SCREAM2-like
Arabidopsis	`AT2G40435` (AT2G40435) transcription factor SCREAM-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818637] identity=50.3; qcov=0.994; evalue=2.76e-47; confidence=medium
Rice	`Os07g0676600` (OsbHLH163) - identity=55.4; qcov=0.961; evalue=6.48e-52; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF22754 (bHLH-TF_ACT-like_plant)
InterPro	-
eggNOG	-
NR	GeneID:131022772

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808275.1`
2	Cytoplasm	细胞质	0.80000	`XP_057808275.1`
3	Cytosol	细胞质基质	0.20000	`XP_057808275.1`
4	Chromosome	染色体	0.00000	`XP_057808279.1`
5	Centromere	着丝粒	0.00000	`XP_057808279.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:12623948`	`TA`	`T`	1bp_deletion	frameshift_variant	72	A11,A15,A16,A22,A3,A5,B101,B104,B105,B11,B115,B118,B12,B121,B126,B129,B130,B133,B137,B2,B20,B22,B24,B27,B28,B32,B48,B50,B51,B53,B54,B58,B59,B63,B65,B66,B68,B70,B71,B75,B78,B80,B81,B84,B86,B9,B91,C14,C15,C18,C2,C21,C24,C25,C26,C34,C37,C42,C48,C49,C54,C57,C60,C61,C63,C65,C70,C73,C74,C79,C9,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808275.1

163 aa

163

bHLH-TF_ACT-like_plant

PF22754 bHLH-TF_ACT-like_plant 75-130 aa

XP_057808277.1

160 aa

160

bHLH-TF_ACT-like_plant

PF22754 bHLH-TF_ACT-like_plant 75-152 aa

XP_057808278.1

157 aa

157

bHLH-TF_ACT-like_plant

PF22754 bHLH-TF_ACT-like_plant 69-124 aa

XP_057808279.1

154 aa

154

bHLH-TF_ACT-like_plant

PF22754 bHLH-TF_ACT-like_plant 69-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808275.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	75	130	6.5e-19	68.5	Plant bHLH transcription factor, ACT-like domain
`XP_057808277.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	75	152	1.2e-23	83.6	Plant bHLH transcription factor, ACT-like domain
`XP_057808278.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	69	124	6.7e-19	68.5	Plant bHLH transcription factor, ACT-like domain
`XP_057808279.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	69	146	1.2e-23	83.7	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057952292.1
ACTTGTGGTACTCATGCAGGAAAAAAACAAGCAAATCATACATCAACATTGCTTGACTGATCATCCCTCTCTCTCTTCTTTCTCTCTCTTTAAAACCCCTCTTCCTCTCCAGGTATCTTCTGATCAAGTGTGTGTTCTGCGCTTTTTTAACGTCTGTACGTTCCAGACGTATAAGAAGTCGAAGTCCAAGGAGAAGAAGAAGAAAAAATATGAGCTCTCGAAACAAAAAGAAAGCAGCACTATATCAGAAATTGGAGCAG...

XM_057952294.1
TTGTGGTACTCATGCAGGAAAAAAACAAGCAAATCATACATCAACATTGCTTGACTGATCATCCCTCTCTCTCTTCTTTCTCTCTCTTTAAAACCCCTCTTCCTCTCCAGGTATCTTCTGATCAAGTGTGTGTTCTGCGCTTTTTTAACGTCTGTACGTTCCAGACGTATAAGAAGTCGAAGTCCAAGGAGAAGAAGAAGAAAAAATATGAGCTCTCGAAACAAAAAGAAAGCAGCACTATATCAGAAATTGGAGCAGCT...

CDS

4 records

下载 CDS FASTA

LOC131022772
ATGAGCTCTCGAAACAAAAAGAAAGCAGCACTATATCAGAAATTGGAGCAGCTTCGCTCTGCTTCTCATTCTACTTCTTTTTTTAATTTAAAAAAGGTGAATAAAGCATCGATCGTGGTGGATGCATCAAGATACATCGAAGAGTTAAAGGAGAGGGTGGAGACGCTGAATCAAGATGTGGCGACTCTACAAAATTCCAGCCGACAAGACTCCTTGCCTGCGGTGAAAGTGGAAACCCTAGAAAAAGGATTCCTAATAAA...

LOC131022772
ATGAGCTCTCGAAACAAAAAGAAAGCAGCACTATATCAGAAATTGGAGCAGCTTCGCTCTGCTTCTCATTCTACTTCTGTGAATAAAGCATCGATCGTGGTGGATGCATCAAGATACATCGAAGAGTTAAAGGAGAGGGTGGAGACGCTGAATCAAGATGTGGCGACTCTACAAAATTCCAGCCGACAAGACTCCTTGCCTGCGGTGAAAGTGGAAACCCTAGAAAAAGGATTCCTAATAAACGTGCTGTCTGAGAAAAA...

Protein

4 records

下载 Protein FASTA

XP_057808275.1
MSSRNKKKAALYQKLEQLRSASHSTSFFNLKKVNKASIVVDASRYIEELKERVETLNQDVATLQNSSRQDSLPAVKVETLEKGFLINVLSEKNCPGLLVSILEAFEELGLDVLDARVSCSDNFRLEAISEVKKHTPTLSPSPTSYIYVYIFHQNPAHIHNTHE

XP_057808277.1
MSSRNKKKAALYQKLEQLRSASHSTSFFNLKKVNKASIVVDASRYIEELKERVETLNQDVATLQNSSRQDSLPAVKVETLEKGFLINVLSEKNCPGLLVSILEAFEELGLDVLDARVSCSDNFRLEAISENEGQSDSIDAQVVKRGVLQAIRNWSDEQHD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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