当前解析结果
SmilChr04G000009| 统一新 Gene ID | SmilChr04G000009 |
|---|---|
| 名称 | SmilChr04G000009 |
| 描述 | phospholipase A(1) DAD1, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 149437 - 150968 / + |
| NCBI Gene ID | LOC131022818 |
|---|---|
| GeneID | 131022818 |
| locus_tag | - |
| NCBI Name | LOC131022818 |
| 原始查询 | LOC131022818 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipase A(1) DAD1, chloroplastic-like |
| 产物 | phospholipase A(1) DAD1%2C chloroplastic-like |
| Arabidopsis | AT2G44810 (DAD1)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819090] identity=63.9; qcov=0.862; evalue=4.68e-167; confidence=high |
| Rice | Os11g0146600- identity=48.9; qcov=0.879; evalue=5.03e-106; confidence=high |
| GO | GO:0004620 (glycerophospholipase activity); GO:0006629 (lipid metabolic process) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01764 (Lipase_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057808328.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057808328.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808328.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808328.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808328.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:149589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B33,C57,D11 |
Chr4:149791 |
AT |
A |
1bp_deletion | frameshift_variant | 48 | A15,A19,B107,B111,B117,B12,B123,B127,B13,B136,B16,B18,B19,B28,B29,B31,B38,B39,B48,B49,B56,B57,B59,B77,B8,B9,B96,B98,B99,C12,C2,C21,C24,C3,C35,C40,C48,C51,C52,C54,C58,C62,C76,C8,C82,C87,C9,D10 |
Chr4:149793 |
T |
TC |
1bp_insertion | frameshift_variant | 48 | A15,A19,B107,B111,B117,B12,B123,B127,B13,B136,B16,B18,B19,B28,B29,B31,B38,B39,B48,B49,B56,B57,B59,B77,B8,B9,B96,B98,B99,C12,C2,C21,C24,C3,C35,C40,C48,C51,C52,C54,C58,C62,C76,C8,C82,C87,C9,D10 |
Chr4:149839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr4:149967 |
TC |
T |
1bp_deletion | frameshift_variant | 108 | A1,A10,A13,A16,A18,A2,A20,A23,A8,A9,B103,B104,B108,B110,B111,B114,B117,B12,B121,B122,B124,B125,B127,B128,B130,B132,B134,B135,B137,B139,B15,B17,B18,B2,B21,B28,B31,B34,B35,B40,B42,B43,B46,B49,B5,B50,B51,B58,B59,B6,B62,B67,B69,B7,B79,B83,B91,B93,B94,B98,C1,C10,C11,C13,C14,C17,C18,C19,C20,C28,C3,C30,C33,C34,C39,C4,C41,C43,C44,C45,C47,C48,C5,C50,C52,C53,C56,C57,C59,C60,C67,C69,C7,C70,C73,C74,C77,C79,C8,C83,C84,C85,D1,D10,D11,D2,D5,D7 |
Chr4:149974 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | A7,B29 |
Chr4:149974 |
C |
CT |
1bp_insertion | CDS_variant | 2 | A7,B29 |
Chr4:150077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr4:150186 |
C |
T |
EMS_canonical_SNV | stop_gained | 69 | A10,A13,A15,A22,A24,A3,A5,A6,A9,B10,B100,B102,B105,B11,B111,B113,B114,B13,B131,B134,B135,B137,B19,B23,B27,B28,B30,B32,B36,B4,B45,B5,B54,B56,B62,B65,B67,B70,B73,B76,B77,B82,B84,B87,B88,B89,B9,B91,B96,C20,C21,C38,C39,C4,C40,C45,C5,C51,C55,C58,C61,C62,C72,C74,C75,C79,C82,C84,D8 |
Chr4:150296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:150313 |
CG |
C |
1bp_deletion | frameshift_variant | 176 | A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B110,B111,B117,B12,B122,B123,B125,B127,B128,B130,B131,B132,B134,B135,B137,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B24,B26,B28,B29,B31,B34,B35,B36,B37,B38,B39,B40,B42,B43,B46,B47,B48,B49,B5,B50,B51,B54,B56,B57,B58,B59,B60,B62,B63,B64,B65,B67,B69,B71,B72,B73,B74,B75,B79,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B91,B93,B94,B95,B96,B98,B99,C1,C10,C11,C13,C14,C15,C19,C2,C20,C21,C25,C26,C27,C28,C29,C3,C30,C33,C34,C35,C37,C38,C39,C4,C41,C42,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C56,C57,C58,C59,C60,C61,C62,C63,C65,C69,C7,C70,C71,C72,C74,C75,C76,C77,C79,C80,C83,C84,D1,D10,D2,D3,D5,D8 |
Chr4:150316 |
G |
GC |
1bp_insertion | frameshift_variant | 173 | A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B110,B111,B117,B12,B122,B123,B125,B127,B128,B130,B131,B132,B134,B135,B137,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B24,B26,B28,B29,B31,B34,B35,B36,B37,B38,B39,B40,B42,B43,B46,B47,B48,B49,B5,B50,B51,B54,B56,B57,B58,B59,B60,B62,B63,B64,B65,B67,B69,B71,B72,B73,B74,B75,B79,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B91,B93,B94,B96,B98,B99,C1,C10,C11,C13,C14,C15,C19,C2,C20,C21,C25,C26,C27,C28,C29,C3,C30,C33,C34,C35,C37,C38,C39,C4,C41,C42,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C56,C57,C58,C59,C60,C61,C62,C63,C65,C69,C7,C70,C71,C72,C74,C75,C76,C79,C80,C83,C84,D1,D10,D2,D3,D5,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808328.1PF01764
Lipase_3 181-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808328.1 |
Pfam | PF01764 |
Lipase_3 | Domain | 181 | 328 | 5.7e-34 | 117.7 | Lipase (class 3) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。