Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000025

染色体: Chr04 坐标: 264758-268886 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000025
名称SmilChr04G000025
描述uncharacterized SmilChr04G000025
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向264758 - 268886 / -

ID 对照

NCBI Gene IDLOC131022835
GeneID131022835
locus_tag-
NCBI NameLOC131022835
原始查询LOC131022835

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述elongation factor [Source:NCBI gene (formerly Entrezgene);Acc:825136]; symbol=AT3G59670; hit=AT3G59670; species=arabidopsis; confidence=medium
产物elongation factor [Source:NCBI gene (formerly Entrezgene);Acc:825136]; symbol=AT3G59670; hit=AT3G59670; species=arabidopsis; confidence=medium
ArabidopsisAT3G59670 (AT3G59670)
elongation factor [Source:NCBI gene (formerly Entrezgene);Acc:825136]
identity=37.8; qcov=0.567; evalue=1.73e-40; confidence=medium
RiceOs05g0365200 (OSJNBb0111K12.6)
-
identity=29.2; qcov=0.839; evalue=3.91e-28; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131022835

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057808350.1
2 Chromosome 染色体 0.00000 XP_057808350.1
3 Centromere 着丝粒 0.00000 XP_057808350.1
4 Chromatin 染色质 0.00000 XP_057808350.1
5 Telomere 端粒 0.00000 XP_057808350.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:265110 C CTA 2bp_insertion frameshift_variant 20 A20,A8,B108,B135,B14,B25,B47,B51,B96,C1,C17,C24,C31,C4,C50,C57,C6,C73,D3,D9
Chr4:265173 G A EMS_canonical_SNV CDS_variant 1 B32
Chr4:265174 G A EMS_canonical_SNV CDS_variant 1 C6
Chr4:265293 A ACT 2bp_insertion frameshift_variant 1 C6
Chr4:265293 A ACT 2bp_insertion CDS_variant 1 C6
Chr4:265488 C T EMS_canonical_SNV CDS_variant 5 A14,B112,B134,B36,D9
Chr4:265551 G A EMS_canonical_SNV CDS_variant 1 B108
Chr4:265572 C T EMS_canonical_SNV CDS_variant 1 C58
Chr4:265740 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:265741 G A EMS_canonical_SNV CDS_variant 1 B24
Chr4:266719 C T EMS_canonical_SNV CDS_variant 3 B128,C66,D5
Chr4:266721 G A EMS_canonical_SNV CDS_variant 2 B48,B54

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057952370.1
CAGAGGTCGACTGTTTATGACAACTCAGATATCATCGAAAAAAGAAAAAAAAGAAAATCATTTATCACGTCGCTCGTAACGAAGACCCAAAGATTTTGGCTCCCGAAAACCATCGCAACCAAAACCTTTACACATTTTCCTCCGACACACAAACCGTTATAGCATGAGCTATTGATGACAACGTTAGGATTTCCGACGAGAAATTGATTGCCTGGGTAGAGTTGATCTTGATGATTATTGTCTTTCTGGAATTTCAAGCG...
XM_057952369.1
CAGAGGTCGACTGTTTATGACAACTCAGATATCATCGAAAAAAGAAAAAAAAGAAAATCATTTATCACGTCGCTCGTAACGAAGACCCAAAGATTTTGGCTCCCGAAAACCATCGCAACCAAAACCTTTACACATTTTCCTCCGACACACAAACCGTTATAGCATGAGCTATTGATGACAACGTTAGGATTTCCGACGAGAAATTGATTGCCTGGGTAGAGTTGATCTTGATGATTATTGTCTTTCTGGAATTTCAAGCG...

CDS

4 records

下载 CDS FASTA
LOC131022835
ATGGATGCATCAGCTAAAATGGACGGGATGTTAGCTAAAGAAATTGAAGACGAGCTTATGAAGTACACAAAGAAGTATGACCATAAAGTGGAGGCAAACTTGGTCGTGAAGACTAATGATGTTCAAATTAATAGTGATGTAGAGGTCAACATCACAGAATGTACAAAATCTTTGGGCAATGAGCTTTTTTCAGCAGAACTCCAGGACACAACCGAGAACTCAAGTTCTTTTGAAGACTGCAATTCTGGTGTAGAAAATGT...
LOC131022835
ATGGATGCATCAGCTAAAATGGACGGGATGTTAGCTAAAGAAATTGAAGACGAGCTTATGAAGTACACAAAGAAGTATGACCATAAAGTGGAGGCAAACTTGGTCGTGAAGACTAATGATGTTCAAATTAATAGTGATGTAGAGGTCAACATCACAGAATGTACAAAATCTTTGGGCAATGAGCTTTTTTCAGCAGAACTCCAGGACACAACCGAGAACTCAAGTTCTTTTGAAGACTGCAATTCTGGTGTAGAAAATGT...

Protein

4 records

下载 Protein FASTA
XP_057808350.1
MDASAKMDGMLAKEIEDELMKYTKKYDHKVEANLVVKTNDVQINSDVEVNITECTKSLGNELFSAELQDTTENSSSFEDCNSGVENVDAFGDSEASSDFRGDAAPALDFDGFGERFRLRRKKLTTHWRSFIHPLMWRCKWVELQIKKLQSRAQLYDRELEVYDEKKQTQLDNSIMIDGTKSLPFSQKNAKMDVFRRKKRRRTEATTDVTAYMSQHNLFSCYENKKCFTEGAFMNNELKNPANQKITTDLEILGDDELLSL...
XP_057808351.1
MDASAKMDGMLAKEIEDELMKYTKKYDHKVEANLVVKTNDVQINSDVEVNITECTKSLGNELFSAELQDTTENSSSFEDCNSGVENVDAFGDSEASSDFRGDAAPALDFDGFGERFRLRRKKLTTHWRSFIHPLMWRCKWVELQIKKLQSRAQLYDRELEVYDEKKQTQLDNSIMIDGTKSLPFSQKNAKMDVFRRKKRRRTEATTDVTAYMSQHNLFSCYENKKCFTEGAFMNNELKNPANQKITTDLEILGDDELLSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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