Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000028`

染色体: Chr04 坐标: 297181-300907 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000028`
名称	SmilChr04G000028
描述	uncharacterized SmilChr04G000028
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	297181 - 300907 / `+`

ID 对照

NCBI Gene ID	`LOC131022841`
GeneID	`131022841`
locus_tag	`-`
NCBI Name	`LOC131022841`
原始查询	`LOC131022841`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825205]; symbol=AT3G60340; hit=AT3G60340; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825205]; symbol=AT3G60340; hit=AT3G60340; species=arabidopsis; confidence=high
Arabidopsis	`AT3G60340` (AT3G60340) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825205] identity=63; qcov=0.984; evalue=9.68e-118; confidence=high
Rice	`Os10g0563000` - identity=65.3; qcov=0.9; evalue=6.64e-113; confidence=high
GO	GO:0016790 (thiolester hydrolase activity); GO:0043231 (intracellular membrane-bounded organelle)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF02089 (Palm_thioest)
InterPro	-
eggNOG	-
NR	GeneID:131022841

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057808361.1`
2	Secreted	分泌到胞外	0.40000	`XP_057808362.1`
3	Cell wall	细胞壁	0.20000	`XP_057808361.1`
4	Lysosome	溶酶体	0.20000	`XP_057808362.1`
5	Nucleus	细胞核	0.00000	`XP_057808361.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:298679`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	B10
`Chr4:298679`	`GCT`	`G`	2bp_deletion	CDS_variant	1	B10
`Chr4:300557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B137,C52
`Chr4:300687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808361.1

320 aa

160

320

Palm_thioest

PF02089 Palm_thioest 30-278 aa

XP_057808362.1

250 aa

125

250

Palm_thioest

PF02089 Palm_thioest 2-208 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808361.1`	Pfam	`PF02089`	Palm_thioest	Domain	30	278	3e-75	253.9	Palmitoyl protein thioesterase
`XP_057808362.1`	Pfam	`PF02089`	Palm_thioest	Domain	2	208	5.1e-66	223.7	Palmitoyl protein thioesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952378.1
TAGTTCCCAGATTTCCCACGTTTCTTGGTCTTATATCGTGTTCCATATTTAAAGGAAAGCCAACAACCCCTCATCTGCGACAACTAACTGAGCCATCCCACCGTTTGTGGAGCTAGAGGCCACTGATTTCAATAGATCATGGCCTCTAACAAGCATTTCTTTGTGATGTTTGCTGTGCTTTCAGTAGCTCTGCCGTCGTTTCTTCCAAGAACTGCTCTTTCCATCCCGTTTGTCGTTTTTCATGGAATTTCTGACAACTG...

XM_057952379.1
TTGTGGAGCTAGAGGCCACTGATTTCAATAGATCATGGCCTCTAACAAGCATTTCTTTGTGATGTTTGCTGTGCTTTCAGTAGCTCTGCCGTCGTTTCTTCCAAGAACTGCTCTTTCCATCCCGTTTGTCGTTTTTCATGGAATTTCTGACAACTGCAATAACAAAGGGCCATTTACAGAGTTTCTGCATTTTCAGTAGTTAGCTTATGAATTCTCATTGTAATATGGTTTTGCTGTTTGATATAATGTTGCAGGAATTT...

CDS

2 records

下载 CDS FASTA

LOC131022841
ATGGCCTCTAACAAGCATTTCTTTGTGATGTTTGCTGTGCTTTCAGTAGCTCTGCCGTCGTTTCTTCCAAGAACTGCTCTTTCCATCCCGTTTGTCGTTTTTCATGGAATTTCTGACAACTGCAATAACAAAGGGATTTCAGAGTTCACCACTCTTCTGAGCGATTGGTCTGGTGCACAGGGGCATTGCATTGAAATTGGAAATGGTGCGATGGATTCCTGGACAATGCCCTTCTTTGAACAGACGGCCTTAGCCTGTGA...

LOC131022841
ATGGATTCCTGGACAATGCCCTTCTTTGAACAGACGGCCTTAGCCTGTGAGAAGGTCAAGAGCATGAGTGAGCTCAGTGGAGGTTACAACGTTATCGGGCTCTCACAGGGTAATTTGGTTGGGAGAGGCGTCATTGAGCTCTGTGACGGAGGACCCCCTGTCAGAAATTTTATATCTCTGGCAGGCCCACATGCTGGAATAGCTGCTATTCCCCTCTGTAAATCGGCTTGGTTCTGCATTCTAGTGGACTTTTTGATCGA...

Protein

2 records

下载 Protein FASTA

XP_057808361.1
MASNKHFFVMFAVLSVALPSFLPRTALSIPFVVFHGISDNCNNKGISEFTTLLSDWSGAQGHCIEIGNGAMDSWTMPFFEQTALACEKVKSMSELSGGYNVIGLSQGNLVGRGVIELCDGGPPVRNFISLAGPHAGIAAIPLCKSAWFCILVDFLIELAIYSNYVQEHLAPSNYIKIPTDLDAYESGCKFLPVINNEFHKNSTYKKRFSSLENLVLIKFENDAILVPKETSWFGYFPDGSWDPILPAQETTLYTEDWIGL...

XP_057808362.1
MDSWTMPFFEQTALACEKVKSMSELSGGYNVIGLSQGNLVGRGVIELCDGGPPVRNFISLAGPHAGIAAIPLCKSAWFCILVDFLIELAIYSNYVQEHLAPSNYIKIPTDLDAYESGCKFLPVINNEFHKNSTYKKRFSSLENLVLIKFENDAILVPKETSWFGYFPDGSWDPILPAQETTLYTEDWIGLKSLDEAGRVKFVNVSGSHLEVSYGEMKDYILPYLLENVTAQPRLSESSHEGKMLKLYASD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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