Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000031`

染色体: Chr04 坐标: 312935-317187 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000031`
名称	SmilChr04G000031
描述	cationic amino acid transporter 9, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	312935 - 317187 / `+`

ID 对照

NCBI Gene ID	`LOC131022844`
GeneID	`131022844`
locus_tag	`-`
NCBI Name	`LOC131022844`
原始查询	`LOC131022844`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cationic amino acid transporter 9, chloroplastic-like
产物	cationic amino acid transporter 9%2C chloroplastic-like
Arabidopsis	`AT1G05940` (CAT9) cationic amino acid transporter 9 [Source:NCBI gene (formerly Entrezgene);Acc:837104] identity=65.6; qcov=0.996; evalue=0; confidence=high
Rice	`Os02g0655700` (OsCAT2) - identity=67.8; qcov=0.993; evalue=0; confidence=high
GO	GO:0006865 (amino acid transport); GO:0015171 (amino acid transmembrane transporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00324 (AA_permease); PF13520 (AA_permease_2); PF13906 (AA_permease_C)
InterPro	-
eggNOG	-
NR	GeneID:131022844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057808366.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057808366.1`
3	Cell membrane	细胞膜	0.20000	`XP_057808366.1`
4	Nucleus	细胞核	0.00000	`XP_057808367.1`
5	Chromosome	染色体	0.00000	`XP_057808367.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:313145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:314099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:314138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B64,C64,C66
`Chr4:314285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C87
`Chr4:314983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr4:315419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:315420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C87
`Chr4:316404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,D10
`Chr4:316962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808366.1

567 aa

284

567

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 45-458 aa PF00324 AA_permease 50-477 aa PF13906 AA_permease_C 493-542 aa

XP_057808367.1

551 aa

276

551

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 45-458 aa PF00324 AA_permease 50-478 aa PF13906 AA_permease_C 493-542 aa

XP_057808368.1

456 aa

228

456

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 1-347 aa PF00324 AA_permease 57-367 aa PF13906 AA_permease_C 382-431 aa

XP_057808370.1

456 aa

228

456

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 1-347 aa PF00324 AA_permease 57-367 aa PF13906 AA_permease_C 382-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808366.1`	Pfam	`PF13520`	AA_permease_2	Family	45	458	1.5e-49	169.8	Amino acid permease
`XP_057808366.1`	Pfam	`PF00324`	AA_permease	Domain	50	477	1.1e-32	114.0	Amino acid permease
`XP_057808366.1`	Pfam	`PF13906`	AA_permease_C	Domain	493	542	1.7e-17	64.0	C-terminus of AA_permease
`XP_057808367.1`	Pfam	`PF13520`	AA_permease_2	Family	45	458	3.2e-51	175.3	Amino acid permease
`XP_057808367.1`	Pfam	`PF00324`	AA_permease	Domain	50	478	2.5e-32	112.9	Amino acid permease
`XP_057808367.1`	Pfam	`PF13906`	AA_permease_C	Domain	493	542	1.6e-17	64.0	C-terminus of AA_permease
`XP_057808368.1`	Pfam	`PF13520`	AA_permease_2	Family	1	347	2.2e-37	129.7	Amino acid permease
`XP_057808368.1`	Pfam	`PF00324`	AA_permease	Domain	57	367	3e-23	83.0	Amino acid permease
`XP_057808368.1`	Pfam	`PF13906`	AA_permease_C	Domain	382	431	1.9e-18	67.0	C-terminus of AA_permease
`XP_057808370.1`	Pfam	`PF13520`	AA_permease_2	Family	1	347	2.2e-37	129.7	Amino acid permease
`XP_057808370.1`	Pfam	`PF00324`	AA_permease	Domain	57	367	3e-23	83.0	Amino acid permease
`XP_057808370.1`	Pfam	`PF13906`	AA_permease_C	Domain	382	431	1.9e-18	67.0	C-terminus of AA_permease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057952383.1
AAACCACCCGTCTCAATCACCACAAAAGTACAACCCACTAACGACACTCGCTGCAGTGGTTAGTACACCGTGAATTGACACTCGCACGACACGCATCGCCGCTTGTACCTTTCCCACACCTATATATATTTCCCAGACGAGAGGAGAGACTGCTTCTCTTCACTAATCGGGAAGCATGAGAATTGAGCAAGGTCCCGTGACGTCATCCCCCTCGCCCTCGTGCTACTCTCGTTTCTGGTCGTCGGCGGCTCGGTCGAAGC...

XM_057952384.1
AAACCACCCGTCTCAATCACCACAAAAGTACAACCCACTAACGACACTCGCTGCAGTGGTTAGTACACCGTGAATTGACACTCGCACGACACGCATCGCCGCTTGTACCTTTCCCACACCTATATATATTTCCCAGACGAGAGGAGAGACTGCTTCTCTTCACTAATCGGGAAGCATGAGAATTGAGCAAGGTCCCGTGACGTCATCCCCCTCGCCCTCGTGCTACTCTCGTTTCTGGTCGTCGGCGGCTCGGTCGAAGC...

CDS

4 records

下载 CDS FASTA

LOC131022844
ATGAGAATTGAGCAAGGTCCCGTGACGTCATCCCCCTCGCCCTCGTGCTACTCTCGTTTCTGGTCGTCGGCGGCTCGGTCGAAGCCGCTTTCTCCGCCGCCGCCGAGCTCCGGCGGAGTCCTCGCGCGCCGCTTAGGCCTCTTTGATCTCATTCTCATTGGCGTTGGAGCCTCCATCGGCGCCGGGATATTTGTCGTCACCGGCACCGTCGCCCGTGACACCGGTCCAGGAGTTACACTTAGCTTCATCATTGCAGGAGC...

Protein

4 records

下载 Protein FASTA

XP_057808366.1
MRIEQGPVTSSPSPSCYSRFWSSAARSKPLSPPPPSSGGVLARRLGLFDLILIGVGASIGAGIFVVTGTVARDTGPGVTLSFIIAGASCVLNALCYAELASRLPAVVGGAYMYAYSAFNELTAFLVFTQLMLDYHIGAASIARSLAGYWVSVLELIPFLKDNIPSWVGHGDEVLGVLSINILAPIILGLLTVVLCRGVGESSILNSIMTVTKVLIVIFVIIVGAFKVDVSNWSPFAPHGTKSILTGATVVFFAYVGFDAV...

XP_057808367.1
MRIEQGPVTSSPSPSCYSRFWSSAARSKPLSPPPPSSGGVLARRLGLFDLILIGVGASIGAGIFVVTGTVARDTGPGVTLSFIIAGASCVLNALCYAELASRLPAVVGGAYMYAYSAFNELTAFLVFTQLMLDYHIGAASIARSLAGYWVSVLELIPFLKDNIPSWVGHGDEVLGVLSINILAPIILGLLTVVLCRGVGESSILNSIMTVTKVLIVIFVIIVGAFKVDVSNWSPFAPHGTKSILTGATVVFFAYVGFDAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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