当前解析结果
SmilChr04G002929| 统一新 Gene ID | SmilChr04G002929 |
|---|---|
| 名称 | SmilChr04G002929 |
| 描述 | uncharacterized SmilChr04G002929 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 45564550 - 45565728 / + |
| NCBI Gene ID | LOC131022868 |
|---|---|
| GeneID | 131022868 |
| locus_tag | - |
| NCBI Name | LOC131022868 |
| 原始查询 | LOC131022868 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | microsomal glutathione s-transferase [Source:NCBI gene (formerly Entrezgene);Acc:842893]; symbol=AT1G65820; hit=AT1G65820; species=arabidopsis; confidence=high |
| 产物 | microsomal glutathione s-transferase [Source:NCBI gene (formerly Entrezgene);Acc:842893]; symbol=AT1G65820; hit=AT1G65820; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G65820 (AT1G65820)microsomal glutathione s-transferase [Source:NCBI gene (formerly Entrezgene);Acc:842893] identity=71.8; qcov=0.979; evalue=1.86e-76; confidence=high |
| Rice | Os03g0709000- identity=62.9; qcov=0.966; evalue=2.05e-66; confidence=high |
| GO | GO:0004364 (glutathione transferase activity); GO:0004602 (glutathione peroxidase activity); GO:0005635 (nuclear envelope); GO:0005783 (endoplasmic reticulum); GO:0016020 (membrane) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01124 (MAPEG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022868 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057808399.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057808399.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057808399.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057808399.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057808399.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:45564698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:45564737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,B44,C14 |
Chr4:45565150 |
T |
TA |
1bp_insertion | frameshift_variant | 3 | A7,B115,B99 |
Chr4:45565150 |
T |
TA |
1bp_insertion | CDS_variant | 3 | A7,B115,B99 |
Chr4:45565151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,B91,C67 |
Chr4:45565153 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | A7 |
Chr4:45565153 |
T |
TG |
1bp_insertion | CDS_variant | 1 | A7 |
Chr4:45565154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,B91,C67 |
Chr4:45565244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808399.1PF01124
MAPEG 15-136 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808399.1 |
Pfam | PF01124 |
MAPEG | Family | 15 | 136 | 1.8e-29 | 103.2 | MAPEG family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。