当前解析结果
SmilChr04G000628| 统一新 Gene ID | SmilChr04G000628 |
|---|---|
| 名称 | SmilChr04G000628 |
| 描述 | ethylene-responsive transcription factor TINY-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7141268 - 7142176 / - |
| NCBI Gene ID | LOC131022919 |
|---|---|
| GeneID | 131022919 |
| locus_tag | - |
| NCBI Name | LOC131022919 |
| 原始查询 | LOC131022919 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor TINY-like |
| 产物 | ethylene-responsive transcription factor TINY-like |
| Arabidopsis | AT5G19790 (RAP2.11)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832099] identity=59.3; qcov=0.285; evalue=1.6e-26; confidence=weak |
| Rice | Os12g0582900 (OsERF#004)- identity=79; qcov=0.205; evalue=1.73e-27; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022919 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808443.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808443.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808443.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808443.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808443.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7141601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B52,B67 |
Chr4:7141628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr4:7141763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C23 |
Chr4:7141817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,B91 |
Chr4:7141818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr4:7141825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B91 |
Chr4:7141844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:7141868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr4:7141925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,C23 |
Chr4:7141960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:7141988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:7141994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808443.1PF00847
AP2 26-75 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808443.1 |
Pfam | PF00847 |
AP2 | Domain | 26 | 75 | 4.4e-14 | 53.2 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。