Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000997`

染色体: Chr04 坐标: 13796371-13797774 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000997`
名称	SmilChr04G000997
描述	uncharacterized SmilChr04G000997
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	13796371 - 13797774 / `+`

ID 对照

NCBI Gene ID	`LOC131023037`
GeneID	`131023037`
locus_tag	`-`
NCBI Name	`LOC131023037`
原始查询	`LOC131023037`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
产物	DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
Arabidopsis	`AT1G43760` (AT1G43760) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.2; qcov=0.792; evalue=5.93e-27; confidence=low
Rice	`Os06g0484800` - identity=25.3; qcov=0.803; evalue=1.4e-26; confidence=low
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF03372 (Exo_endo_phos); PF14529 (Exo_endo_phos_2)
InterPro	-
eggNOG	-
NR	GeneID:131023037

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057808558.1`
2	Nucleus	细胞核	0.60000	`XP_057808558.1`
3	Cytosol	细胞质基质	0.60000	`XP_057808558.1`
4	Chromosome	染色体	0.00000	`XP_057808558.1`
5	Centromere	着丝粒	0.00000	`XP_057808558.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:13796688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr4:13796700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,D6
`Chr4:13796727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B21,B53,B68
`Chr4:13796729`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B14,B18,B86,C21,C75
`Chr4:13796729`	`TC`	`T`	1bp_deletion	CDS_variant	5	B14,B18,B86,C21,C75
`Chr4:13796733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,B94,C55
`Chr4:13796742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B21,B53,B68
`Chr4:13796802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B88,C35
`Chr4:13796832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C21,C75
`Chr4:13796838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C51
`Chr4:13796867`	`G`	`GTT`	2bp_insertion	frameshift_variant	3	B28,B88,C35
`Chr4:13796867`	`G`	`GTT`	2bp_insertion	CDS_variant	3	B28,B88,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808558.1

467 aa

234

467

Exo_endo_phos

Exo_endo_phos_2

PF03372 Exo_endo_phos 4-227 aa PF14529 Exo_endo_phos_2 105-231 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808558.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	4	227	2e-15	57.8	Endonuclease/Exonuclease/phosphatase family
`XP_057808558.1`	Pfam	`PF14529`	Exo_endo_phos_2	Domain	105	231	5.7e-10	39.8	Endonuclease-reverse transcriptase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952575.1
ATGAATTTGTTATCTTATAACATTCGGGGCTTGGGGAGTGTTGCGAAGCAGAGAGATGTTACTGATTTGGTGAAAGGGCAGAAGATCGATTTTTGTTGCTTACAGGAGACAAAGATGGAGGTGTTCAGGGATTTGTTCTGTAAATCTTGGTGGGGGTCTAATTATATAGACAGAGCGATTAGGAATTCGGAGGGAAGGGCTGGAGGAATTGTTTGCTTGTGGAATAGGGAGGTTTTCGAAGCCTCTAGTACGTGGGATTT...

CDS

1 records

下载 CDS FASTA

LOC131023037
ATGAATTTGTTATCTTATAACATTCGGGGCTTGGGGAGTGTTGCGAAGCAGAGAGATGTTACTGATTTGGTGAAAGGGCAGAAGATCGATTTTTGTTGCTTACAGGAGACAAAGATGGAGGTGTTCAGGGATTTGTTCTGTAAATCTTGGTGGGGGTCTAATTATATAGACAGAGCGATTAGGAATTCGGAGGGAAGGGCTGGAGGAATTGTTTGCTTGTGGAATAGGGAGGTTTTCGAAGCCTCTAGTACGTGGGATTT...

Protein

1 records

下载 Protein FASTA

XP_057808558.1
MNLLSYNIRGLGSVAKQRDVTDLVKGQKIDFCCLQETKMEVFRDLFCKSWWGSNYIDRAIRNSEGRAGGIVCLWNREVFEASSTWDLPGAVVVNSRYKEGDILCCIINVYAPVGSGDKRILWDALSSIVEQNTDRSVCILGDFNSVRRRDERVGSGEAFGATDARSFEEFIRENDLEEIKTHGRKFTWYKPNGKCKSKIDRFLVNENWLAAWEGTSARGLQRSISDHCPIILTTRSEDWGPRPFRFLNAWVNHSEFEDMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器