当前解析结果
SmilChr04G001055| 统一新 Gene ID | SmilChr04G001055 |
|---|---|
| 名称 | SmilChr04G001055 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15020730 - 15023338 / + |
| NCBI Gene ID | LOC131023049 |
|---|---|
| GeneID | 131023049 |
| locus_tag | - |
| NCBI Name | LOC131023049 |
| 原始查询 | LOC131023049 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=33; qcov=0.749; evalue=6.2e-98; confidence=low |
| Rice | Os06g0166100- identity=36.5; qcov=0.787; evalue=5.63e-124; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023049 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808574.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057808574.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808574.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808574.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808574.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15020731 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B10,C87 |
Chr4:15020731 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B10,C87 |
Chr4:15020763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:15020783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr4:15021185 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr4:15021185 |
GC |
G |
1bp_deletion | CDS_variant | 1 | D10 |
Chr4:15021186 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | B115,B118,B53,C25,C26,C42,C57 |
Chr4:15021187 |
T |
TA |
1bp_insertion | frameshift_variant | 27 | B120,B132,B21,B48,B49,B57,B60,B61,B72,B73,B75,B87,B90,B92,C27,C29,C31,C5,C55,C71,C73,C78,C84,D1,D10,D4,D9 |
Chr4:15021286 |
G |
GA |
1bp_insertion | frameshift_variant | 75 | A20,A22,A23,A25,A4,A5,A7,B1,B109,B112,B113,B114,B117,B120,B122,B126,B127,B128,B129,B131,B135,B139,B22,B25,B26,B3,B34,B37,B46,B48,B5,B51,B54,B59,B63,B69,B7,B70,B71,B74,B8,B81,B83,B98,C13,C15,C16,C17,C18,C21,C26,C27,C28,C36,C37,C4,C44,C45,C46,C51,C54,C57,C59,C62,C68,C7,C76,C82,C84,C9,D11,D2,D4,D7,D9 |
Chr4:15021309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr4:15021313 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | B104,D10 |
Chr4:15021313 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | B104,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808574.1PF03101
FAR1 62-118 aa
PF21056
ZSWIM1-3_RNaseH-like 207-323 aa
PF10551
MULE 240-334 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808574.1 |
Pfam | PF03101 |
FAR1 | Domain | 62 | 118 | 7.2e-07 | 30.6 | FAR1 DNA-binding domain |
XP_057808574.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 207 | 323 | 3.6e-13 | 50.3 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057808574.1 |
Pfam | PF10551 |
MULE | Domain | 240 | 334 | 3.5e-29 | 101.8 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。