Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001105`

染色体: Chr04 坐标: 15833264-15834025 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001105`
名称	SmilChr04G001105
描述	pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15833264 - 15834025 / `+`

ID 对照

NCBI Gene ID	`LOC131023063`
GeneID	`131023063`
locus_tag	`-`
NCBI Name	`LOC131023063`
原始查询	`LOC131023063`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g62914%2C mitochondrial-like
Arabidopsis	`AT1G05670` (AT1G05670) Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837074] identity=29.4; qcov=0.794; evalue=7.16e-29; confidence=low
Rice	`Os03g0336000` - identity=41; qcov=0.684; evalue=1.16e-40; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131023063

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057808590.1`
2	Chloroplast stroma	叶绿体基质	0.20000	`XP_057808590.1`
3	Nucleus	细胞核	0.00000	`XP_057808590.1`
4	Chromosome	染色体	0.00000	`XP_057808590.1`
5	Centromere	着丝粒	0.00000	`XP_057808590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15833291`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C87
`Chr4:15833291`	`C`	`CT`	1bp_insertion	CDS_variant	1	C87
`Chr4:15833301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:15833364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,C32
`Chr4:15833416`	`CG`	`C`	1bp_deletion	frameshift_variant	18	A16,B101,B105,B108,B126,B27,B51,B54,B65,B84,B91,C14,C2,C43,C70,C9,D2,D8
`Chr4:15833448`	`AAG`	`A`	2bp_deletion	frameshift_variant	17	A16,B101,B105,B108,B126,B27,B51,B54,B65,B91,C14,C2,C43,C70,C9,D2,D8
`Chr4:15833480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr4:15833504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:15833607`	`GT`	`G`	1bp_deletion	frameshift_variant	81	A11,A16,A20,A21,A3,A5,A6,B1,B10,B101,B103,B104,B105,B107,B109,B112,B114,B117,B118,B122,B13,B133,B136,B20,B21,B22,B23,B24,B26,B28,B36,B37,B41,B42,B48,B57,B61,B66,B67,B68,B77,B78,B80,B84,B85,B9,B93,B95,B97,B99,C12,C14,C16,C18,C22,C23,C3,C30,C31,C37,C39,C40,C42,C43,C44,C48,C51,C56,C6,C61,C63,C65,C7,C71,C77,C81,C83,C84,D1,D2,D5
`Chr4:15833610`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C69
`Chr4:15833610`	`TA`	`T`	1bp_deletion	CDS_variant	1	C69
`Chr4:15833671`	`CAA`	`C`	2bp_deletion	frameshift_variant	9	A2,B69,B79,B82,C64,C66,C78,C8,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808590.1

253 aa

126

253

PPR_3

PPR_long

PPR_1

PPR

PPR_2

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13812 PPR_3 112-167 aa PF17177 PPR_long 115-226 aa PF12854 PPR_1 120-150 aa PF01535 PPR 127-155 aa PF13041 PPR_2 141-170 aa PF23276 TPR_24 143-240 aa PF13812 PPR_3 145-202 aa PF12854 PPR_1 153-186 aa PF13041 PPR_2 158-205 aa PF01535 PPR 161-190 aa PF12854 PPR_1 189-218 aa PF13041 PPR_2 192-239 aa PF01535 PPR 196-224 aa PF01535 PPR 230-246 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808590.1`	Pfam	`PF13812`	PPR_3	Repeat	112	167	8.3e-24	84.2	Pentatricopeptide repeat domain
`XP_057808590.1`	Pfam	`PF17177`	PPR_long	Repeat	115	226	1.2e-08	35.4	Pentacotripeptide-repeat region of PRORP
`XP_057808590.1`	Pfam	`PF12854`	PPR_1	Repeat	120	150	6.3e-36	122.5	PPR repeat
`XP_057808590.1`	Pfam	`PF01535`	PPR	Repeat	127	155	1.2e-21	76.0	PPR repeat
`XP_057808590.1`	Pfam	`PF13041`	PPR_2	Repeat	141	170	6.8e-45	151.7	PPR repeat family
`XP_057808590.1`	Pfam	`PF23276`	TPR_24	Repeat	143	240	2e-09	38.2	Pentatricopeptide repeat-containing protein
`XP_057808590.1`	Pfam	`PF13812`	PPR_3	Repeat	145	202	8.3e-24	84.2	Pentatricopeptide repeat domain
`XP_057808590.1`	Pfam	`PF12854`	PPR_1	Repeat	153	186	6.3e-36	122.5	PPR repeat
`XP_057808590.1`	Pfam	`PF13041`	PPR_2	Repeat	158	205	6.8e-45	151.7	PPR repeat family
`XP_057808590.1`	Pfam	`PF01535`	PPR	Repeat	161	190	1.2e-21	76.0	PPR repeat
`XP_057808590.1`	Pfam	`PF12854`	PPR_1	Repeat	189	218	6.3e-36	122.5	PPR repeat
`XP_057808590.1`	Pfam	`PF13041`	PPR_2	Repeat	192	239	6.8e-45	151.7	PPR repeat family
`XP_057808590.1`	Pfam	`PF01535`	PPR	Repeat	196	224	1.2e-21	76.0	PPR repeat
`XP_057808590.1`	Pfam	`PF01535`	PPR	Repeat	230	246	1.2e-21	76.0	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952607.1
ATGCTTTCTTCCCAATCATGCACTTTTCTTCATCACTCCCCGATTTTTTCTGCATTCAATCCAAATCCGCCCTTCTTCTACACCACCAATTCATTCCATCGCCGTAAATTTCATGTATTCGCCGCTCCAATCAAAGAAAACCACCATCTTCACGGACACACGAGCGCCAGAAAACTGCAAGTTGAAGATTTTCTTCAAACCGTTGCCACAGCTCCGGAAAAGCTCGAAGCGTTGGAAAAACTCCATAGAAATGGAGAAAT...

CDS

1 records

下载 CDS FASTA

LOC131023063
ATGCTTTCTTCCCAATCATGCACTTTTCTTCATCACTCCCCGATTTTTTCTGCATTCAATCCAAATCCGCCCTTCTTCTACACCACCAATTCATTCCATCGCCGTAAATTTCATGTATTCGCCGCTCCAATCAAAGAAAACCACCATCTTCACGGACACACGAGCGCCAGAAAACTGCAAGTTGAAGATTTTCTTCAAACCGTTGCCACAGCTCCGGAAAAGCTCGAAGCGTTGGAAAAACTCCATAGAAATGGAGAAAT...

Protein

1 records

下载 Protein FASTA

XP_057808590.1
MLSSQSCTFLHHSPIFSAFNPNPPFFYTTNSFHRRKFHVFAAPIKENHHLHGHTSARKLQVEDFLQTVATAPEKLEALEKLHRNGEIQTINELNRLLVSLISSYEVELARKLKSSLSSLGLSPNVWTYSILVTGFCKSNATEATSVLHEMLENGFEPNVATFTTLINSLCESGRMRDAYEVFDVMSKIGCKPTINTFNCLLKGLCYVGRIEEAYDLLGRIKRSSIKPDIYSYTAMMDGFLQSGPFKRGDGVAR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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