当前解析结果
SmilChr01G002056| 统一新 Gene ID | SmilChr01G002056 |
|---|---|
| 名称 | SmilChr01G002056 |
| 描述 | uncharacterized SmilChr01G002056 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 36358088 - 36359104 / + |
| NCBI Gene ID | LOC131023065 |
|---|---|
| GeneID | 131023065 |
| locus_tag | - |
| NCBI Name | LOC131023065 |
| 原始查询 | LOC131023065 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124]; symbol=AT3G25400; hit=AT3G25400; species=arabidopsis; confidence=high |
| 产物 | dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124]; symbol=AT3G25400; hit=AT3G25400; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G25400 (AT3G25400)dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124] identity=82.7; qcov=0.788; evalue=9.05e-61; confidence=high |
| Rice | Os04g0346800- identity=74.6; qcov=0.864; evalue=8.18e-59; confidence=high |
| GO | GO:0009143 (nucleoside triphosphate catabolic process); GO:0047429 (nucleoside triphosphate diphosphatase activity) |
| KEGG | smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03819 (MazG); PF12643 (MazG-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023065 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808593.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057808593.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808593.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808593.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808593.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:36358696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,C41,C54 |
Chr1:36358742 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B11,C80 |
Chr1:36358742 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B11,C80 |
Chr1:36358852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808593.1PF03819
MazG 36-103 aa
PF12643
MazG-like 47-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808593.1 |
Pfam | PF03819 |
MazG | Domain | 36 | 103 | 1.2e-05 | 26.2 | MazG nucleotide pyrophosphohydrolase domain |
XP_057808593.1 |
Pfam | PF12643 |
MazG-like | Domain | 47 | 125 | 6.5e-07 | 30.2 | MazG-like family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。