Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002056

染色体: Chr01 坐标: 36358088-36359104 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002056
名称SmilChr01G002056
描述uncharacterized SmilChr01G002056
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向36358088 - 36359104 / +

ID 对照

NCBI Gene IDLOC131023065
GeneID131023065
locus_tag-
NCBI NameLOC131023065
原始查询LOC131023065

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124]; symbol=AT3G25400; hit=AT3G25400; species=arabidopsis; confidence=high
产物dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124]; symbol=AT3G25400; hit=AT3G25400; species=arabidopsis; confidence=high
ArabidopsisAT3G25400 (AT3G25400)
dCTP pyrophosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:822124]
identity=82.7; qcov=0.788; evalue=9.05e-61; confidence=high
RiceOs04g0346800
-
identity=74.6; qcov=0.864; evalue=8.18e-59; confidence=high
GOGO:0009143 (nucleoside triphosphate catabolic process); GO:0047429 (nucleoside triphosphate diphosphatase activity)
KEGGsmil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF03819 (MazG); PF12643 (MazG-like)
InterPro-
eggNOG-
NRGeneID:131023065

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057808593.1
2 Cytosol 细胞质基质 1.00000 XP_057808593.1
3 Nucleus 细胞核 0.00000 XP_057808593.1
4 Chromosome 染色体 0.00000 XP_057808593.1
5 Centromere 着丝粒 0.00000 XP_057808593.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:36358696 G A EMS_canonical_SNV CDS_variant 3 B71,C41,C54
Chr1:36358742 GA G 1bp_deletion frameshift_variant 2 B11,C80
Chr1:36358742 GA G 1bp_deletion CDS_variant 2 B11,C80
Chr1:36358852 C T EMS_canonical_SNV CDS_variant 1 B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057808593.1
132 aa
N
1
66
132
MazG
MazG-like
C
PF03819 MazG 36-103 aa PF12643 MazG-like 47-125 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808593.1 Pfam PF03819 MazG Domain 36 103 1.2e-05 26.2 MazG nucleotide pyrophosphohydrolase domain
XP_057808593.1 Pfam PF12643 MazG-like Domain 47 125 6.5e-07 30.2 MazG-like family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057952610.1
CATTTTCTTTTGGCACTCACCACACTCATCATTTTTCTGTGTGATTCTGAAAAAAAAAAGAGCATAAAAAACAAATGACAGAATCGAAAAAGTGTGATGGTGAAATGAGCGTAACGCTCGATCTTCTCAAGAAGAAAATGGATGATTTTGCAAAAGAAAGAGACTGGGAACAGTACCACAGCCCCAGAAATCTTCTTCTCGCTCTGGTGGGGGAAGTGGGTGAGCTGTCGGAAATATTTCAATGGAAAGGGGAGGTTGAA...

CDS

1 records

下载 CDS FASTA
LOC131023065
ATGACAGAATCGAAAAAGTGTGATGGTGAAATGAGCGTAACGCTCGATCTTCTCAAGAAGAAAATGGATGATTTTGCAAAAGAAAGAGACTGGGAACAGTACCACAGCCCCAGAAATCTTCTTCTCGCTCTGGTGGGGGAAGTGGGTGAGCTGTCGGAAATATTTCAATGGAAAGGGGAGGTTGAAAAAGGGCTTCCCGGTTGGAAAGAGGAAGAGAGAACTCATGTCGGAGAAGAATTATCCGACGTCTTGCTTTACCT...

Protein

1 records

下载 Protein FASTA
XP_057808593.1
MTESKKCDGEMSVTLDLLKKKMDDFAKERDWEQYHSPRNLLLALVGEVGELSEIFQWKGEVEKGLPGWKEEERTHVGEELSDVLLYLVRLSDMCGIDLGKAALRKIELNALKYPAPLRKGSSDKNNDDGNAT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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