当前解析结果
SmilChr04G001135| 统一新 Gene ID | SmilChr04G001135 |
|---|---|
| 名称 | SmilChr04G001135 |
| 描述 | uncharacterized SmilChr04G001135 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 16670624 - 16672728 / - |
| NCBI Gene ID | LOC131023078 |
|---|---|
| GeneID | 131023078 |
| locus_tag | - |
| NCBI Name | LOC131023078 |
| 原始查询 | LOC131023078 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak |
| 产物 | Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006]; symbol=AT2G15180; hit=AT2G15180; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G15180 (AT2G15180)Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006] identity=37.1; qcov=0.116; evalue=1.86e-08; confidence=weak |
| Rice | Os02g0566300- identity=25; qcov=0.598; evalue=4.3e-06; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF30863 (PRO_PEG10-RTL1); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023078 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808603.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057808603.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057808603.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057808603.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057808603.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:16670826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr4:16670827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr4:16671129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C1 |
Chr4:16671134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:16671271 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B33 |
Chr4:16671271 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B33 |
Chr4:16671286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B39 |
Chr4:16671295 |
A |
AAT |
2bp_insertion | frameshift_variant | 4 | B13,B17,B67,C49 |
Chr4:16671295 |
A |
AAT |
2bp_insertion | CDS_variant | 4 | B13,B17,B67,C49 |
Chr4:16671302 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | A8,B37,B68,C46,C83,D11 |
Chr4:16671350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr4:16671362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B39,B85,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808603.1PF03732
PEG10_N-capsid 84-166 aa
PF30901
PEG10-RTL1_C-capsid 176-249 aa
PF00098
zf-CCHC 314-331 aa
PF30863
PRO_PEG10-RTL1 407-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808603.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 84 | 166 | 1.3e-19 | 71.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057808603.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 176 | 249 | 2e-07 | 31.6 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057808603.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 314 | 331 | 1.2e-05 | 25.9 | Zinc knuckle |
XP_057808603.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 407 | 484 | 1.1e-07 | 33.0 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。