当前解析结果
SmilChr04G001176| 统一新 Gene ID | SmilChr04G001176 |
|---|---|
| 名称 | SmilChr04G001176 |
| 描述 | uncharacterized SmilChr04G001176 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 17733441 - 17735924 / - |
| NCBI Gene ID | LOC131023092 |
|---|---|
| GeneID | 131023092 |
| locus_tag | - |
| NCBI Name | LOC131023092 |
| 原始查询 | LOC131023092 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=27.5; qcov=0.444; evalue=7.39e-08; confidence=low |
| Rice | Os12g0292200- identity=43.6; qcov=0.264; evalue=1.53e-13; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023092 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808617.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808617.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808617.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808617.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:17733511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B12,C38,C69 |
Chr4:17735097 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B94 |
Chr4:17735097 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B94 |
Chr4:17735098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B80,C28,C60 |
Chr4:17735099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B7,C28,C39 |
Chr4:17735110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B43,C15 |
Chr4:17735139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B31,B44,C73 |
Chr4:17735154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C69 |
Chr4:17735161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B69,C18,C33,C61 |
Chr4:17735166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C69 |
Chr4:17735174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr4:17735184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B115,B135 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。