当前解析结果
SmilChr04G001212| 统一新 Gene ID | SmilChr04G001212 |
|---|---|
| 名称 | SmilChr04G001212 |
| 描述 | uncharacterized SmilChr04G001212 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 18845965 - 18849480 / + |
| NCBI Gene ID | LOC131023106 |
|---|---|
| GeneID | 131023106 |
| locus_tag | - |
| NCBI Name | LOC131023106 |
| 原始查询 | LOC131023106 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=25.3; qcov=0.134; evalue=3.5e-10; confidence=weak |
| Rice | Os08g0202300- identity=30.6; qcov=0.338; evalue=7.55e-57; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023106 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057808633.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057808633.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808633.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808633.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808633.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:18846009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B62,B95,C16,C20 |
Chr4:18846019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B79,C39,C57 |
Chr4:18846023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr4:18846038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr4:18846054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B49,B9,C11 |
Chr4:18846066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B77 |
Chr4:18846069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr4:18846082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr4:18846112 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B49,C11 |
Chr4:18846112 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B49,C11 |
Chr4:18846141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B59,B6,B95,C33 |
Chr4:18846151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808633.1PF00078
RVT_1 230-389 aa
PF17919
RT_RNaseH_2 452-550 aa
PF17917
RT_RNaseH 479-579 aa
PF13456
RVT_3 614-733 aa
PF17921
Integrase_H2C2 822-873 aa
PF00665
rve 890-981 aa
PF31073
DUF8803 1059-1120 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808633.1 |
Pfam | PF00078 |
RVT_1 | Domain | 230 | 389 | 1.4e-30 | 107.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057808633.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 452 | 550 | 1.1e-20 | 74.2 | RNase H-like domain found in reverse transcriptase |
XP_057808633.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 479 | 579 | 1.6e-15 | 57.8 | RNase H-like domain found in reverse transcriptase |
XP_057808633.1 |
Pfam | PF13456 |
RVT_3 | Domain | 614 | 733 | 1.2e-15 | 58.2 | Reverse transcriptase-like |
XP_057808633.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 822 | 873 | 2.6e-12 | 47.4 | Integrase zinc binding domain |
XP_057808633.1 |
Pfam | PF00665 |
rve | Domain | 890 | 981 | 3.4e-17 | 63.3 | Integrase core domain |
XP_057808633.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1059 | 1120 | 1.4e-24 | 86.4 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。