当前解析结果
SmilChr04G001343| 统一新 Gene ID | SmilChr04G001343 |
|---|---|
| 名称 | SmilChr04G001343 |
| 描述 | uncharacterized SmilChr04G001343 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 21743564 - 21746968 / + |
| NCBI Gene ID | LOC131023144 |
|---|---|
| GeneID | 131023144 |
| locus_tag | - |
| NCBI Name | LOC131023144 |
| 原始查询 | LOC131023144 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=29.9; qcov=0.384; evalue=8.89e-49; confidence=low |
| Rice | Os06g0484800- identity=31.6; qcov=0.612; evalue=2.91e-90; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023144 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808675.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057808675.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057808675.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808675.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808675.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:21743581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr4:21743691 |
G |
A |
EMS_canonical_SNV | stop_gained | 32 | A4,A9,B100,B102,B122,B140,B16,B22,B27,B31,B39,B64,B78,B80,B88,B91,B95,C11,C19,C22,C30,C31,C36,C4,C41,C43,C46,C52,C53,C69,C74,D3 |
Chr4:21743697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,D3 |
Chr4:21743734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B16,B5,B69 |
Chr4:21743735 |
C |
T |
EMS_canonical_SNV | stop_gained | 19 | A14,A23,A25,B121,B130,B138,B15,B32,B63,B81,B84,C37,C41,C47,C73,C78,C81,C84,C9 |
Chr4:21743781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr4:21743794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B71,C34,C35,C76 |
Chr4:21743853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B126,C63 |
Chr4:21743867 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B27,C75 |
Chr4:21743867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C75 |
Chr4:21743886 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A9,B131,C44 |
Chr4:21743886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B131,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808675.1PF00078
RVT_1 257-518 aa
PF13966
zf-RVT 777-852 aa
PF13456
RVT_3 982-1102 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808675.1 |
Pfam | PF00078 |
RVT_1 | Domain | 257 | 518 | 2e-29 | 103.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057808675.1 |
Pfam | PF13966 |
zf-RVT | Domain | 777 | 852 | 6.8e-16 | 59.4 | zinc-binding in reverse transcriptase |
XP_057808675.1 |
Pfam | PF13456 |
RVT_3 | Domain | 982 | 1102 | 5.9e-17 | 62.4 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。