当前解析结果
SmilChr04G001378| 统一新 Gene ID | SmilChr04G001378 |
|---|---|
| 名称 | SmilChr04G001378 |
| 描述 | uncharacterized SmilChr04G001378 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 22372206 - 22374247 / + |
| NCBI Gene ID | LOC131023157 |
|---|---|
| GeneID | 131023157 |
| locus_tag | - |
| NCBI Name | LOC131023157 |
| 原始查询 | LOC131023157 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=22.4; qcov=1.01; evalue=5.01e-42; confidence=weak |
| Rice | Os01g0595300- identity=24.6; qcov=0.672; evalue=2.9e-39; confidence=weak |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023157 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808684.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057808684.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808684.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808684.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808684.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:22372212 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A13,B113,B13,B16,B46,B47,B62,B8,B85,B99,C10,C32,C43,C48,C68,C86 |
Chr4:22372250 |
G |
GA |
1bp_insertion | frameshift_variant | 15 | A23,B104,B114,B117,B119,B122,B128,B16,B18,B3,B69,C30,C47,C85,D8 |
Chr4:22372257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr4:22372283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,C18 |
Chr4:22372293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:22372308 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A1,A9,B100,B111,B114,B12,B126,B2,B23,B37,B55,B60,B66,B70,B74,B77,B91,B98,C16,C18,C3,C36,C65,C69,C79,D3 |
Chr4:22372363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C48 |
Chr4:22372389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,B81,C6,C84 |
Chr4:22372448 |
GTA |
G |
2bp_deletion | frameshift_variant | 57 | A14,A15,A5,A6,B102,B103,B107,B111,B112,B121,B127,B133,B134,B137,B138,B139,B15,B16,B24,B29,B31,B32,B38,B45,B47,B5,B56,B57,B6,B81,B86,B94,B96,C1,C12,C15,C24,C25,C33,C34,C38,C44,C46,C49,C51,C55,C56,C59,C6,C63,C64,C66,C7,C76,C77,C84,D1 |
Chr4:22372479 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | B35 |
Chr4:22372479 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B35 |
Chr4:22372495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B90,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808684.1PF10551
MULE 393-486 aa
PF00872
Transposase_mut 394-490 aa
PF04434
SWIM 639-664 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808684.1 |
Pfam | PF10551 |
MULE | Domain | 393 | 486 | 2.2e-21 | 76.8 | MULE transposase domain |
XP_057808684.1 |
Pfam | PF00872 |
Transposase_mut | Family | 394 | 490 | 4.7e-11 | 42.9 | Transposase, Mutator family |
XP_057808684.1 |
Pfam | PF04434 |
SWIM | Domain | 639 | 664 | 0.00044 | 20.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。