当前解析结果
SmilChr04G001548| 统一新 Gene ID | SmilChr04G001548 |
|---|---|
| 名称 | SmilChr04G001548 |
| 描述 | uncharacterized SmilChr04G001548 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 25578979 - 25581450 / - |
| NCBI Gene ID | LOC131023207 |
|---|---|
| GeneID | 131023207 |
| locus_tag | - |
| NCBI Name | LOC131023207 |
| 原始查询 | LOC131023207 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=low |
| 产物 | K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G31150 (AT1G31150)K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=28.7; qcov=0.534; evalue=6.86e-13; confidence=low |
| Rice | -- |
| GO | GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity) |
| KEGG | - |
| Pfam | PF02902 (Peptidase_C48); PF09331 (DUF1985); PF29561 (DUF8566) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023207 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808731.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057808731.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057808731.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808731.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808731.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:25578994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B26,C35,C43 |
Chr4:25578996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C2 |
Chr4:25579002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr4:25579015 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B2,B36,B95 |
Chr4:25579015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B36,B95 |
Chr4:25579039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr4:25579056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,C74 |
Chr4:25579074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr4:25579142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B95 |
Chr4:25579144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C33 |
Chr4:25579164 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B126,C17 |
Chr4:25579164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,C17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808731.1PF29561
DUF8566 84-273 aa
PF09331
DUF1985 118-243 aa
PF02902
Peptidase_C48 385-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808731.1 |
Pfam | PF29561 |
DUF8566 | Domain | 84 | 273 | 3.2e-08 | 34.3 | Domain of unknown function (DUF8566) |
XP_057808731.1 |
Pfam | PF09331 |
DUF1985 | Family | 118 | 243 | 5.8e-14 | 53.0 | Domain of unknown function (DUF1985) |
XP_057808731.1 |
Pfam | PF02902 |
Peptidase_C48 | Domain | 385 | 481 | 0.00027 | 21.6 | Ulp1 protease family, C-terminal catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。