当前解析结果
SmilChr04G001590| 统一新 Gene ID | SmilChr04G001590 |
|---|---|
| 名称 | SmilChr04G001590 |
| 描述 | uncharacterized SmilChr04G001590 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 26481274 - 26482134 / + |
| NCBI Gene ID | LOC131023216 |
|---|---|
| GeneID | 131023216 |
| locus_tag | - |
| NCBI Name | LOC131023216 |
| 原始查询 | LOC131023216 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:825381]; symbol=AT3G62080; hit=AT3G62080; species=arabidopsis; confidence=low |
| 产物 | SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:825381]; symbol=AT3G62080; hit=AT3G62080; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G62080 (AT3G62080)SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:825381] identity=43.8; qcov=0.369; evalue=5.66e-12; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023216 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808741.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057808741.1 |
| 3 | Spindle pole body | Spindle pole body | 0.20000 | XP_057808741.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808741.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808741.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:26481290 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | B102,B129,B35,B46,B61,B7,B72,B8,B84,C29,C5,C75 |
Chr4:26481339 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | B104,B105,B115,B15,C60,C69,C70 |
Chr4:26481359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr4:26481421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr4:26481443 |
G |
GGA |
2bp_insertion | frameshift_variant | 1 | B87 |
Chr4:26481443 |
G |
GGA |
2bp_insertion | CDS_variant | 1 | B87 |
Chr4:26481854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:26481952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:26481962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:26481983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:26481988 |
A |
AC |
1bp_insertion | frameshift_variant | 47 | A18,A9,B1,B105,B106,B111,B12,B129,B13,B132,B36,B4,B55,B60,B61,B63,B67,B68,B71,B72,B74,B77,B89,B91,B98,C20,C26,C29,C32,C33,C42,C48,C5,C53,C57,C61,C68,C71,C72,C73,C80,C85,C86,C9,D10,D2,D8 |
Chr4:26482000 |
G |
GCC |
2bp_insertion | frameshift_variant | 30 | A18,B1,B105,B106,B129,B13,B132,B36,B61,B63,B67,B68,B72,B89,B91,C26,C29,C32,C33,C42,C5,C53,C57,C71,C73,C80,C85,C9,D10,D2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。