当前解析结果
SmilChr04G001931| 统一新 Gene ID | SmilChr04G001931 |
|---|---|
| 名称 | SmilChr04G001931 |
| 描述 | uncharacterized SmilChr04G001931 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31409969 - 31411453 / + |
| NCBI Gene ID | LOC131023287 |
|---|---|
| GeneID | 131023287 |
| locus_tag | - |
| NCBI Name | LOC131023287 |
| 原始查询 | LOC131023287 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=31.7; qcov=0.338; evalue=6.22e-27; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023287 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808817.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057808817.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057808817.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057808817.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057808817.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31410295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:31410360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,C3 |
Chr4:31410497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B68,B7,C22 |
Chr4:31410504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,C68 |
Chr4:31410520 |
GA |
G |
1bp_deletion | frameshift_variant | 11 | A3,A7,B121,B39,B60,B72,B76,B79,C25,C43,C62 |
Chr4:31410628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr4:31410646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,B64,B90,B92 |
Chr4:31410675 |
CG |
C |
1bp_deletion | frameshift_variant | 21 | A5,B108,B109,B133,B19,B24,B27,B38,B39,B50,B61,B66,B69,C28,C54,C64,C66,C74,C78,C79,D5 |
Chr4:31410685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C70 |
Chr4:31410718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr4:31410730 |
AAC |
A |
2bp_deletion | frameshift_variant | 4 | B107,B71,C31,C49 |
Chr4:31410730 |
AAC |
A |
2bp_deletion | CDS_variant | 4 | B107,B71,C31,C49 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。