Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002092`

染色体: Chr01 坐标: 36939345-36943434 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002092`
名称	SmilChr01G002092
描述	DExH-box ATP-dependent RNA helicase DExH18, mitochondrial-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	36939345 - 36943434 / `+`

ID 对照

NCBI Gene ID	`LOC131023322`
GeneID	`131023322`
locus_tag	`-`
NCBI Name	`LOC131023322`
原始查询	`LOC131023322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH18, mitochondrial-like
产物	DExH-box ATP-dependent RNA helicase DExH18%2C mitochondrial-like
Arabidopsis	`AT5G39840` (AT5G39840) ATP-dependent RNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:833980] identity=62.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0459800` - identity=65.7; qcov=0.821; evalue=0; confidence=high
GO	GO:0000965 (mitochondrial RNA 3'-end processing); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0006401 (RNA catabolic process); GO:0016817 (hydrolase activity, acting on acid anhydrides); GO:0045025 (mitochondrial degradosome)
KEGG	-
Pfam	PF00271 (Helicase_C); PF12513 (SUV3_C); PF18147 (Suv3_C_1); PF22527 (DEXQc_Suv3); PF23703 (DExH18_N)
InterPro	-
eggNOG	-
NR	GeneID:131023322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057808849.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057808849.1`
3	Nucleus	细胞核	0.00000	`XP_057808849.1`
4	Chromosome	染色体	0.00000	`XP_057808849.1`
5	Centromere	着丝粒	0.00000	`XP_057808849.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:36939702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B66,B94
`Chr1:36939724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr1:36940154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,C27
`Chr1:36940343`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D8
`Chr1:36940343`	`GC`	`G`	1bp_deletion	CDS_variant	1	D8
`Chr1:36940479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,C50,C66
`Chr1:36940814`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C50
`Chr1:36940814`	`TG`	`T`	1bp_deletion	CDS_variant	1	C50
`Chr1:36941412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,C13,C34,C55,C59
`Chr1:36941430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B34,B86
`Chr1:36941451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B138,B2
`Chr1:36941476`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808849.1

789 aa

394

789

DExH18_N

DEXQc_Suv3

Helicase_C

Suv3_C_1

SUV3_C

PF23703 DExH18_N 155-239 aa PF22527 DEXQc_Suv3 251-404 aa PF00271 Helicase_C 422-531 aa PF18147 Suv3_C_1 613-655 aa PF12513 SUV3_C 677-724 aa

XP_057808854.1

789 aa

394

789

DExH18_N

DEXQc_Suv3

Helicase_C

Suv3_C_1

SUV3_C

PF23703 DExH18_N 155-239 aa PF22527 DEXQc_Suv3 251-404 aa PF00271 Helicase_C 422-531 aa PF18147 Suv3_C_1 613-655 aa PF12513 SUV3_C 677-724 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808849.1`	Pfam	`PF23703`	DExH18_N	Domain	155	239	5.2e-38	129.9	DExH-box ATP-dependent RNA helicase DExH18, N-terminal
`XP_057808849.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	251	404	1.4e-70	236.5	DEXQ-box helicase domain of Suv3
`XP_057808849.1`	Pfam	`PF00271`	Helicase_C	Domain	422	531	2.8e-14	54.0	Helicase conserved C-terminal domain
`XP_057808849.1`	Pfam	`PF18147`	Suv3_C_1	Domain	613	655	9.9e-17	61.3	Suv3 C-terminal domain 1
`XP_057808849.1`	Pfam	`PF12513`	SUV3_C	Domain	677	724	2.1e-11	44.2	ATP-dependent RNA helicase SUV3 C-terminal domain
`XP_057808854.1`	Pfam	`PF23703`	DExH18_N	Domain	155	239	5.2e-38	129.9	DExH-box ATP-dependent RNA helicase DExH18, N-terminal
`XP_057808854.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	251	404	1.4e-70	236.5	DEXQ-box helicase domain of Suv3
`XP_057808854.1`	Pfam	`PF00271`	Helicase_C	Domain	422	531	2.8e-14	54.0	Helicase conserved C-terminal domain
`XP_057808854.1`	Pfam	`PF18147`	Suv3_C_1	Domain	613	655	9.9e-17	61.3	Suv3 C-terminal domain 1
`XP_057808854.1`	Pfam	`PF12513`	SUV3_C	Domain	677	724	2.1e-11	44.2	ATP-dependent RNA helicase SUV3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952871.1
AACAGTTGCCATCCATTTTTCTGCGTCGCACGCATTCCCAAATTAACAATCGATCTTCTTTCACATCATTTTTAATTTTTTAGCAATTTATAATTTTTTGTTGCTCATATCTTCCGTGAGAATAGCTCGGCTCAAACCTTTCCACCACCGCCAACTGCCTCAACTCCGCCTGCCGGAGCCTGCTTGAATCGCGTTCGAAGTTGAGGAATTCCCTTCCCTTGCCGACGAATATGTGCTTTAGGTTACTTTATTCTTACCTT...

XM_057952866.1
TGCGTCGCACGCATTCCCAAATTAACAATCGATCTTCTTTCACATCATTTTTAATTTTTTAGCAATTTATAATTTTTTGTTGCTCATATCTTCCGTGAGAATAGCTCGGCTCAAACCTTTCCACCACCGCCAACTGCCTCAACTCCGCCTGCCGGAGCCTGCTTGAATCGCGTTCGAAGTTGAGGAATTCCCTTCCCTTGCCGACGAATATGTGCTTTAGGTTACTTTATTCTTACCTTTCATCGCACTAGAATTTAAAT...

CDS

2 records

下载 CDS FASTA

LOC131023322
ATGGCAAGAGGTACGGCGAAACGCCTCCTTTCTCTTTATTCCTGCAAGACTAGGAATTTGTATGCGGTGAGGAATTCAGTTTCAGGTCGTTTCGTCCATCATTCTCGCCCTGCCCTAGTTCATAGTGTTGCTGCGCTGCAAATTCCTAACCATTTACAGCTGCGGCAGCGCGAGCTCATTGAATTCACAAAGTTTGGTGTTTTCCCCTATTTTCGTGGACATTGCTTTTGCTCCTTGTCAGAAAATGAGAAGCTTACCCT...

Protein

2 records

下载 Protein FASTA

XP_057808849.1
MARGTAKRLLSLYSCKTRNLYAVRNSVSGRFVHHSRPALVHSVAALQIPNHLQLRQRELIEFTKFGVFPYFRGHCFCSLSENEKLTLDSSKIVENQVEANDIDEEERMFESENECVSLEEKKTNFVEIALRDPLEIYKELKEAPDSKMQSRSDWDTVSEICRCFCQSGWASNQALAVYIGASFFPLAGRKFGSFFKKKCSNDLVKYLVSLGPGDQADRFLFPIFVEFCMEEFPDEIKRFRGMVESADMTRPHTWFPFARA...

XP_057808854.1
MARGTAKRLLSLYSCKTRNLYAVRNSVSGRFVHHSRPALVHSVAALQIPNHLQLRQRELIEFTKFGVFPYFRGHCFCSLSENEKLTLDSSKIVENQVEANDIDEEERMFESENECVSLEEKKTNFVEIALRDPLEIYKELKEAPDSKMQSRSDWDTVSEICRCFCQSGWASNQALAVYIGASFFPLAGRKFGSFFKKKCSNDLVKYLVSLGPGDQADRFLFPIFVEFCMEEFPDEIKRFRGMVESADMTRPHTWFPFARA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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