当前解析结果
SmilChr04G002069| 统一新 Gene ID | SmilChr04G002069 |
|---|---|
| 名称 | SmilChr04G002069 |
| 描述 | cyclin-dependent kinase G-2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 33445921 - 33446564 / + |
| NCBI Gene ID | LOC131023328 |
|---|---|
| GeneID | 131023328 |
| locus_tag | - |
| NCBI Name | LOC131023328 |
| 原始查询 | LOC131023328 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-dependent kinase G-2-like |
| 产物 | cyclin-dependent kinase G-2-like |
| Arabidopsis | AT1G67580 (AT1G67580)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843079] identity=41.1; qcov=1.04; evalue=2.6e-35; confidence=medium |
| Rice | Os04g0488000 (CDKG)- identity=41.8; qcov=1.03; evalue=1.45e-36; confidence=medium |
| GO | GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0007346 (regulation of mitotic cell cycle) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023328 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808855.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057808855.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057808855.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057808855.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808855.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:33445957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B7,C42,C8 |
Chr4:33446041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,B86,C77 |
Chr4:33446068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,C1,C72 |
Chr4:33446140 |
CG |
C |
1bp_deletion | frameshift_variant | 14 | A4,A9,B105,B138,B78,C19,C30,C31,C35,C45,C46,C47,C53,C74 |
Chr4:33446152 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A7,B1,B30,B35,B44,B46,B55,B56,B68,B96,B98,C23,C56,C80 |
Chr4:33446226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:33446253 |
TC |
T |
1bp_deletion | frameshift_variant | 19 | A1,A2,A6,B122,B127,B132,B17,B34,B45,B54,B56,B62,B94,B96,C38,C4,C7,D10,D5 |
Chr4:33446271 |
GC |
G |
1bp_deletion | frameshift_variant | 9 | A15,B100,B33,B84,B9,B94,C24,C56,C77 |
Chr4:33446294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:33446307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:33446321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:33446377 |
TCC |
T |
2bp_deletion | frameshift_variant | 51 | A16,A19,A20,A3,B104,B108,B109,B114,B117,B123,B129,B13,B131,B135,B137,B23,B27,B3,B36,B42,B43,B51,B72,B74,B8,B80,B87,B99,C14,C16,C28,C29,C37,C4,C41,C43,C45,C46,C5,C54,C57,C62,C7,C75,C78,C79,C82,D11,D3,D6,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808855.1PF00069
Pkinase 1-165 aa
PF07714
PK_Tyr_Ser-Thr 3-99 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808855.1 |
Pfam | PF00069 |
Pkinase | Domain | 1 | 165 | 7.2e-38 | 131.2 | Protein kinase domain |
XP_057808855.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 3 | 99 | 2.4e-14 | 54.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。