当前解析结果
SmilChr01G002107| 统一新 Gene ID | SmilChr01G002107 |
|---|---|
| 名称 | SmilChr01G002107 |
| 描述 | membrane protein of ER body-like protein |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37089875 - 37098408 / - |
| NCBI Gene ID | LOC131023432 |
|---|---|
| GeneID | 131023432 |
| locus_tag | - |
| NCBI Name | LOC131023432 |
| 原始查询 | LOC131023432 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | membrane protein of ER body-like protein |
| 产物 | membrane protein of ER body-like protein |
| Arabidopsis | AT4G27860 (MEB1)vacuolar iron transporter (VIT) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828899] identity=42; qcov=0.388; evalue=1.91e-37; confidence=low |
| Rice | Os06g0103800- identity=40.2; qcov=0.466; evalue=1.41e-42; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057808956.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057808956.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808956.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808956.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808956.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37090188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:37090243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C12,D3 |
Chr1:37090428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B67 |
Chr1:37090444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:37090509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B24,C13,C85 |
Chr1:37090511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B113,B25,C61 |
Chr1:37090512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr1:37090867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B24,C13,C85 |
Chr1:37090917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr1:37091157 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B64 |
Chr1:37091157 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B64 |
Chr1:37091161 |
G |
GA |
1bp_insertion | frameshift_variant | 45 | A10,A18,A2,A24,A4,A8,B106,B11,B112,B12,B122,B124,B126,B139,B23,B27,B33,B34,B35,B40,B42,B43,B47,B61,B62,B70,B85,B86,B88,B89,B9,B93,C11,C26,C35,C6,C63,C67,C69,C71,C8,C83,D6,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。