当前解析结果
SmilChr04G002710| 统一新 Gene ID | SmilChr04G002710 |
|---|---|
| 名称 | SmilChr04G002710 |
| 描述 | succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 42716097 - 42719041 / - |
| NCBI Gene ID | LOC131023468 |
|---|---|
| GeneID | 131023468 |
| locus_tag | - |
| NCBI Name | LOC131023468 |
| 原始查询 | LOC131023468 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial |
| 产物 | succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3%2C mitochondrial |
| Arabidopsis | AT5G65165 (SDH2-3)succinate dehydrogenase 2-3 [Source:NCBI gene (formerly Entrezgene);Acc:836640] identity=71.3; qcov=0.938; evalue=2.11e-148; confidence=high |
| Rice | Os09g0370300 (SDH2-2)- identity=66.4; qcov=0.821; evalue=6.39e-121; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0009055 (electron transfer activity); GO:0009060 (aerobic respiration); GO:0022904 (respiratory electron transport chain); GO:0051537 (2 iron, 2 sulfur cluster binding) |
| KEGG | smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF13085 (Fer2_3); PF13183 (Fer4_8); PF13237 (Fer4_10); PF13534 (Fer4_17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023468 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057808991.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057808991.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057808991.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808991.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808991.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:42716231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:42716278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B27 |
Chr4:42716301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B33 |
Chr4:42716326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,D11 |
Chr4:42716329 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B140 |
Chr4:42716329 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B140 |
Chr4:42716600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B22,B35,C42,D7 |
Chr4:42716612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C83,D2 |
Chr4:42716719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:42716742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,C11,C69 |
Chr4:42716747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,B99 |
Chr4:42716771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808991.1PF13085
Fer2_3 52-157 aa
PF13183
Fer4_8 192-266 aa
PF13237
Fer4_10 194-264 aa
PF13534
Fer4_17 194-268 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808991.1 |
Pfam | PF13085 |
Fer2_3 | Domain | 52 | 157 | 1.4e-32 | 112.6 | 2Fe-2S iron-sulfur cluster binding domain |
XP_057808991.1 |
Pfam | PF13183 |
Fer4_8 | Domain | 192 | 266 | 6.8e-08 | 33.7 | 4Fe-4S dicluster domain |
XP_057808991.1 |
Pfam | PF13237 |
Fer4_10 | Domain | 194 | 264 | 1.4e-05 | 25.7 | 4Fe-4S dicluster domain |
XP_057808991.1 |
Pfam | PF13534 |
Fer4_17 | Domain | 194 | 268 | 2.6e-09 | 38.2 | 4Fe-4S dicluster domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。