Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002111`

染色体: Chr01 坐标: 37160280-37163308 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002111`
名称	SmilChr01G002111
描述	uncharacterized SmilChr01G002111
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37160280 - 37163308 / `+`

ID 对照

NCBI Gene ID	`LOC131023484`
GeneID	`131023484`
locus_tag	`-`
NCBI Name	`LOC131023484`
原始查询	`LOC131023484`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	B-cell receptor-associated protein 31-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834924]; symbol=AT5G48660; hit=AT5G48660; species=arabidopsis; confidence=high
产物	B-cell receptor-associated protein 31-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834924]; symbol=AT5G48660; hit=AT5G48660; species=arabidopsis; confidence=high
Arabidopsis	`AT5G48660` (AT5G48660) B-cell receptor-associated protein 31-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834924] identity=68.4; qcov=0.995; evalue=1.67e-79; confidence=high
Rice	`Os03g0848400` - identity=59.9; qcov=0.981; evalue=2.41e-77; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0005789 (endoplasmic reticulum membrane); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0070973 (protein localization to endoplasmic reticulum exit site)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131023484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057809013.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057809013.1`
3	Nucleus membrane	核膜	0.40000	`XP_057809013.1`
4	Nucleus	细胞核	0.00000	`XP_057809013.1`
5	Chromosome	染色体	0.00000	`XP_057809013.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37161031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B8,C19
`Chr1:37162625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B54,B82
`Chr1:37162709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:37162872`	`CAT`	`C`	2bp_deletion	frameshift_variant	2	C21,C39
`Chr1:37162872`	`CAT`	`C`	2bp_deletion	CDS_variant	2	C21,C39
`Chr1:37162920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr1:37162924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr1:37162926`	`C`	`CT`	1bp_insertion	frameshift_variant	5	B129,B51,B89,C11,C69
`Chr1:37162926`	`C`	`CT`	1bp_insertion	CDS_variant	5	B129,B51,B89,C11,C69
`Chr1:37162934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,B92
`Chr1:37162972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B8,C19
`Chr1:37162978`	`GA`	`G`	1bp_deletion	frameshift_variant	6	A25,B104,B35,B54,B66,D10

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953030.1
TTATGATAAATTCACAATCCTGTGTGCAAAAAAACCCTAAGAACTCAAACCACTTGTGAATTAGTGTCTGAATAATGTGAACTCTGCAAATTTAGGAGATGAATATAGAATTTGCCAATTCACTCCTAAAATAGAAGAATGTGTTGCTTTCACTTCACTTACCAATTCATGCTGTGTAATAACTACTCTCACCATCATAAGCTTTTTTGACTCATTTCATTTCATGCTGCTTTATGTGCTCGTCCTTTTTTCGCCCTGTA...

CDS

1 records

下载 CDS FASTA

LOC131023484
ATGATTCCTTTGTTCTTTCTGGTTGTGTGTGCGGAGGGTTTGGTTGCATTCCTTTTAATGGTCAAGATTGGTCCGTTTAGGGAGCTTGTAATAAAGGGGTTGGATCAAGTGAAGATGAGAAGGGCCACAGTTCTAACCATTGCGGGAACCATCTTTGTCATTTTGTTGTCTGATTTATTTAGCATTCTCAAGATTCAGAACAAGGGCACGAAACACGGAACGATGACGCCGATGGATCAAGTTCTTTGGAGGACAAACTT...

Protein

1 records

下载 Protein FASTA

XP_057809013.1
MIPLFFLVVCAEGLVAFLLMVKIGPFRELVIKGLDQVKMRRATVLTIAGTIFVILLSDLFSILKIQNKGTKHGTMTPMDQVLWRTNLLEATLMGFSLFLGFLIDRMHHYIQKLIKLRSNTGVSKQEVENLEKEKLQLKVKEEKASAEVKKLRKEISSLTENLNKLKSESAEKDKKVETAEGHVAALQKQAADLLLEYDRLLEDNQNLQNQALGHRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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