当前解析结果
SmilChr04G003515| 统一新 Gene ID | SmilChr04G003515 |
|---|---|
| 名称 | SmilChr04G003515 |
| 描述 | uncharacterized SmilChr04G003515 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 51514880 - 51526402 / - |
| NCBI Gene ID | LOC131023584 |
|---|---|
| GeneID | 131023584 |
| locus_tag | - |
| NCBI Name | LOC131023584 |
| 原始查询 | LOC131023584 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DWA1; symbol=DWA1; hit=Os04g0473900; species=rice; confidence=high |
| 产物 | DWA1; symbol=DWA1; hit=Os04g0473900; species=rice; confidence=high |
| Arabidopsis | AT1G20480 (AT1G20480)AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838636] identity=28.8; qcov=0.202; evalue=2.23e-18; confidence=weak |
| Rice | Os04g0473900 (DWA1)- identity=57.7; qcov=0.83; evalue=0; confidence=high |
| GO | GO:0008610 (lipid biosynthetic process); GO:0031177 (phosphopantetheine binding) |
| KEGG | - |
| Pfam | PF00501 (AMP-binding); PF00550 (PP-binding); PF01593 (Amino_oxidase); PF13450 (NAD_binding_8); PF23024 (AMP-dom_DIP2-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023584 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057809111.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057809111.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057809111.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057809111.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057809111.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:51514922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,D5 |
Chr4:51514990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:51515056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C57 |
Chr4:51515085 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B75,C27 |
Chr4:51515085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C27 |
Chr4:51515119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:51515122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr4:51515311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr4:51515471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,D11 |
Chr4:51515566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:51515658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C80 |
Chr4:51515752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809111.1PF13450
NAD_binding_8 18-84 aa
PF01593
Amino_oxidase 24-257 aa
PF00501
AMP-binding 519-903 aa
PF23024
AMP-dom_DIP2-like 947-1072 aa
PF00550
PP-binding 1105-1167 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809111.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 18 | 84 | 2.9e-14 | 53.8 | NAD(P)-binding Rossmann-like domain |
XP_057809111.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 24 | 257 | 5e-13 | 49.8 | Flavin containing amine oxidoreductase |
XP_057809111.1 |
Pfam | PF00501 |
AMP-binding | Family | 519 | 903 | 1.1e-56 | 193.1 | AMP-binding enzyme |
XP_057809111.1 |
Pfam | PF23024 |
AMP-dom_DIP2-like | Domain | 947 | 1072 | 7.8e-09 | 36.3 | Disco-interacting protein 2-like, AMP domain |
XP_057809111.1 |
Pfam | PF00550 |
PP-binding | Domain | 1105 | 1167 | 1.8e-10 | 41.6 | Phosphopantetheine attachment site |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。