当前解析结果
SmilChr04G003701| 统一新 Gene ID | SmilChr04G003701 |
|---|---|
| 名称 | SmilChr04G003701 |
| 描述 | uncharacterized protein At1g28695-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53361205 - 53363263 / + |
| NCBI Gene ID | LOC131023616 |
|---|---|
| GeneID | 131023616 |
| locus_tag | - |
| NCBI Name | LOC131023616 |
| 原始查询 | LOC131023616 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771]; symbol=AT1G28710; hit=AT1G28710; species=arabidopsis; confidence=high |
| 产物 | Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771]; symbol=AT1G28710; hit=AT1G28710; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G28710 (AT1G28710)Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839771] identity=52.8; qcov=0.921; evalue=4.7e-102; confidence=high |
| Rice | Os03g0731800 (OSJNBa0079G12.19)- identity=44.5; qcov=0.921; evalue=1.11e-75; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF03407 (Nucleotid_trans) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023616 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057809140.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057809140.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057809140.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057809140.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057809140.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53361691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B78,B96,C23 |
Chr4:53361725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B131 |
Chr4:53361770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr4:53361818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C72,D4 |
Chr4:53361896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr4:53361906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C23 |
Chr4:53361910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C23 |
Chr4:53361923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C23 |
Chr4:53362807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C14 |
Chr4:53362924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr4:53362934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr4:53363222 |
G |
GT |
1bp_insertion | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057809140.1PF03407
Nucleotid_trans 76-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809140.1 |
Pfam | PF03407 |
Nucleotid_trans | Family | 76 | 282 | 2.5e-56 | 191.7 | Nucleotide-diphospho-sugar transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。