Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002129`

染色体: Chr01 坐标: 37297534-37299100 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002129`
名称	SmilChr01G002129
描述	uncharacterized SmilChr01G002129
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37297534 - 37299100 / `+`

ID 对照

NCBI Gene ID	`LOC131023651`
GeneID	`131023651`
locus_tag	`-`
NCBI Name	`LOC131023651`
原始查询	`LOC131023651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP2/B3-like transcriptional factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817937]; symbol=AT2G33720; hit=AT2G33720; species=arabidopsis; confidence=weak
产物	AP2/B3-like transcriptional factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817937]; symbol=AT2G33720; hit=AT2G33720; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G33720` (AT2G33720) AP2/B3-like transcriptional factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817937] identity=31.9; qcov=0.269; evalue=9.4e-06; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF03754 (At2g31720-like)
InterPro	-
eggNOG	-
NR	GeneID:131023651

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809180.1`
2	Chromosome	染色体	0.00000	`XP_057809180.1`
3	Centromere	着丝粒	0.00000	`XP_057809180.1`
4	Chromatin	染色质	0.00000	`XP_057809180.1`
5	Telomere	端粒	0.00000	`XP_057809180.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37297892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B8,C19
`Chr1:37297910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:37297912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C18,C75
`Chr1:37297941`	`GCC`	`G`	2bp_deletion	frameshift_variant	96	A1,A10,A15,A21,A3,A5,A8,B107,B110,B111,B115,B12,B120,B121,B123,B134,B135,B137,B138,B139,B19,B20,B21,B24,B28,B29,B30,B32,B35,B40,B46,B49,B53,B55,B56,B63,B71,B76,B77,B78,B8,B81,B84,B9,B93,B96,B99,C1,C10,C13,C14,C15,C16,C17,C18,C19,C25,C28,C29,C3,C31,C32,C33,C34,C37,C4,C43,C45,C46,C47,C49,C51,C52,C54,C56,C57,C58,C62,C64,C66,C68,C74,C75,C76,C77,C79,C8,C80,C86,C87,C9,D1,D4,D5,D7,D8
`Chr1:37297944`	`GC`	`G`	1bp_deletion	frameshift_variant	91	A1,A10,A15,A21,A5,A8,B107,B110,B111,B115,B12,B120,B121,B123,B134,B135,B137,B138,B139,B19,B20,B21,B24,B28,B29,B30,B32,B35,B40,B46,B49,B53,B55,B56,B63,B71,B76,B77,B78,B8,B81,B84,B9,B93,B96,C1,C10,C14,C15,C17,C18,C19,C25,C28,C29,C3,C31,C32,C33,C37,C4,C43,C45,C46,C47,C49,C51,C52,C54,C56,C57,C58,C62,C64,C66,C68,C74,C75,C76,C77,C79,C8,C80,C86,C87,C9,D1,D4,D5,D7,D8
`Chr1:37298042`	`AT`	`A`	1bp_deletion	frameshift_variant	6	B118,B72,B95,B99,C16,C84
`Chr1:37298127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C1,C17,C31,C4,C49
`Chr1:37298132`	`AGG`	`A`	2bp_deletion	frameshift_variant	3	B94,C12,D3
`Chr1:37298132`	`AGG`	`A`	2bp_deletion	CDS_variant	3	B94,C12,D3
`Chr1:37298136`	`A`	`AAC`	2bp_insertion	frameshift_variant	3	B94,C12,D3
`Chr1:37298136`	`A`	`AAC`	2bp_insertion	CDS_variant	3	B94,C12,D3
`Chr1:37298139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,C12,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809180.1

350 aa

175

350

At2g31720-like

PF03754 At2g31720-like 220-335 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809180.1`	Pfam	`PF03754`	At2g31720-like	Domain	220	335	1.4e-11	45.1	B3 domain-containing protein At2g31720-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953197.1
TCTACATTTTGTTTTCAAAAACTTTTTCTATATATTAGTATTAGTATAGAATTAGAGTTGTGTGATAGTGTACCGTTAACACATGAAATTTAATAGGATTAGCGCGTTGCACATTGTTTGCAGCAAATCAAAATCATATTAGAACTGTAATTCATGTTCTATAAGGAATCTGAAACAATTCCAACCCCTATATATGATGATCACTTACATTTTAATCTTACATCTTATTTTCAACATTCTTAATCTTCTTCATACGTAAC...

CDS

1 records

下载 CDS FASTA

LOC131023651
ATGGCGAAGTTTGATAGTAAATTGAGAGAAGATTTAGTTCTGACGTCAAATCTGAGCGCTGCAGTTGATGGAGAAACATATGTTTCGAGGGATTCCGGCAGCCACATTCCTCCACCGCCGCCGCTTTACAAGTGGCAACTCCCCGGTTTCTTCGACGGCGTGGAAGACGATGAAGTCGATACAACCTTGAGTTTGAGGACTCCTGGTAGTAACAACACCAATAAATCAACAGGTAAAACGTCGGAGCCCCAAACATCCGC...

Protein

1 records

下载 Protein FASTA

XP_057809180.1
MAKFDSKLREDLVLTSNLSAAVDGETYVSRDSGSHIPPPPPLYKWQLPGFFDGVEDDEVDTTLSLRTPGSNNTNKSTGKTSEPQTSAAAHTPRWNLPSFFDGLEEDEVDTTLSLRPPGSTNNKSTKPPEKASRPEEAAETSARNIRPPPVVINAVPLRCALPALADHPVEASVHIPPVVEINATPLRNKKIRKSSGDKSRINKRRRNEEDERPPIPSQGLLRAVELQSGSVPEFLYRKRLEKCDVSRHHNRLLVTGSERL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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