当前解析结果
SmilChr04G004113| 统一新 Gene ID | SmilChr04G004113 |
|---|---|
| 名称 | SmilChr04G004113 |
| 描述 | uncharacterized SmilChr04G004113 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56043982 - 56044983 / - |
| NCBI Gene ID | LOC131023653 |
|---|---|
| GeneID | 131023653 |
| locus_tag | - |
| NCBI Name | LOC131023653 |
| 原始查询 | LOC131023653 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vitellogenin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241205]; symbol=AT3G06868; hit=AT3G06868; species=arabidopsis; confidence=medium |
| 产物 | vitellogenin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241205]; symbol=AT3G06868; hit=AT3G06868; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G06868 (AT3G06868)vitellogenin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241205] identity=39.9; qcov=1.17; evalue=1.06e-58; confidence=medium |
| Rice | Os02g0526700- identity=34.8; qcov=1.19; evalue=2.02e-33; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023653 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809179.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057809179.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057809179.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057809179.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057809179.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56044182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr4:56044393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,C35 |
Chr4:56044429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B32,C42 |
Chr4:56044456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B73,B8,B83,C14 |
Chr4:56044615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr4:56044712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr4:56044764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:56044766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr4:56044770 |
C |
CTG |
2bp_insertion | frameshift_variant | 100 | A11,A13,A19,A21,A22,A23,A24,A25,A5,A7,A9,B105,B114,B115,B117,B12,B121,B122,B124,B129,B13,B131,B132,B135,B138,B139,B14,B140,B15,B18,B26,B28,B34,B35,B38,B39,B42,B43,B47,B49,B50,B53,B54,B60,B61,B65,B70,B71,B73,B79,B81,B82,B84,B85,B86,B89,B9,B91,B92,C10,C12,C17,C18,C2,C20,C21,C23,C24,C25,C28,C29,C3,C30,C32,C38,C4,C42,C43,C45,C48,C53,C54,C55,C6,C64,C66,C68,C7,C70,C72,C75,C80,C84,C86,C87,D1,D3,D5,D8,D9 |
Chr4:56044771 |
C |
CG |
1bp_insertion | frameshift_variant | 96 | A11,A13,A19,A21,A22,A23,A24,A25,A5,A7,A9,B105,B114,B115,B117,B12,B121,B122,B129,B13,B131,B132,B135,B138,B139,B14,B140,B15,B18,B26,B28,B34,B35,B38,B39,B42,B43,B47,B49,B50,B53,B54,B60,B61,B65,B70,B71,B79,B81,B82,B84,B85,B86,B89,B9,B91,B92,C10,C12,C17,C18,C2,C20,C21,C23,C24,C25,C28,C29,C3,C30,C32,C38,C4,C42,C43,C45,C48,C53,C54,C55,C6,C68,C7,C70,C72,C75,C80,C84,C86,C87,D1,D3,D5,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。