Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001205`

染色体: Chr04 坐标: 18638698-18649252 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001205`
名称	SmilChr04G001205
描述	methionine S-methyltransferase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	18638698 - 18649252 / `+`

ID 对照

NCBI Gene ID	`LOC131023667`
GeneID	`131023667`
locus_tag	`-`
NCBI Name	`LOC131023667`
原始查询	`LOC131023667`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	methionine S-methyltransferase-like
产物	methionine S-methyltransferase-like
Arabidopsis	`AT5G49810` (MMT) methionine S-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:835044] identity=69.2; qcov=1; evalue=0; confidence=high
Rice	`Os05g0105000` - identity=65.5; qcov=0.999; evalue=0; confidence=high
GO	GO:0008168 (methyltransferase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2); PF05175 (MTS); PF06325 (PrmA)
InterPro	-
eggNOG	-
NR	GeneID:131023667

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057809194.1`
2	Cytoplasm	细胞质	0.80000	`XP_057809194.1`
3	Nucleus	细胞核	0.00000	`XP_057809194.1`
4	Chromosome	染色体	0.00000	`XP_057809194.1`
5	Centromere	着丝粒	0.00000	`XP_057809194.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:18641318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:18645083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:18647921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,C29,C71
`Chr4:18647960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C29,D10
`Chr4:18648207`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B83
`Chr4:18648207`	`ATT`	`A`	2bp_deletion	CDS_variant	1	B83
`Chr4:18648892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B1
`Chr4:18648923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809194.1

1076 aa

538

1076

MTS

PrmA

Aminotran_1_2

PF05175 MTS 111-162 aa PF06325 PrmA 111-162 aa PF00155 Aminotran_1_2 728-1067 aa

XP_057809195.1

995 aa

498

995

MTS

PrmA

Aminotran_1_2

PF05175 MTS 30-81 aa PF06325 PrmA 30-81 aa PF00155 Aminotran_1_2 647-986 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809194.1`	Pfam	`PF05175`	MTS	Domain	111	162	1e-05	25.9	Methyltransferase small domain
`XP_057809194.1`	Pfam	`PF06325`	PrmA	Family	111	162	4.7e-05	23.7	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057809194.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	728	1067	6.9e-21	75.5	Aminotransferase class I and II
`XP_057809195.1`	Pfam	`PF05175`	MTS	Domain	30	81	9.4e-06	26.0	Methyltransferase small domain
`XP_057809195.1`	Pfam	`PF06325`	PrmA	Family	30	81	4.3e-05	23.9	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057809195.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	647	986	5.4e-21	75.9	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953211.1
ACAGATACATACGAGTATATGTATATACAAATACACGAACACACACAGAGAAAGAGAGACGCACACAAGAGTTCCTCCTCTTCGAGTCTGTGAGGGCAGGGCAGCACACGCAATTATTGCGCTGATCATGGAAGAGTTTCTGGAGCAATGCCAACAGTCCGGTGATGCAGCCTACAGTGCGCTACGATCACTCCTGGAGCGCCTCGAGGACCCGGCTACCCGAACCGAAGCCCGGATCTTCCTGTCGGAGCTCCAGAAAC...

XM_057953212.1
TAATGTGGTTTACAGAGCTGGTTTGTAACTGTAGTTGGAAATAAACTTGAGATTTGTTGTGATCCTTGGATGAGCTGCTGGTGACAGCCTTTTGTGGACAATATTGGGAAAAATGATTTTAATGTGAAAAAAGAATATTAGGTTTATTTTCCACAGTGGAATGCGGAATGCTATTCATTTCGATCCAATAATGGAGAAAATGTTACCAGAAGAGGAAGAAACTTACAATGATGGTGATACCCAGTATCTTTATACCTGAG...

CDS

2 records

下载 CDS FASTA

LOC131023667
ATGGAAGAGTTTCTGGAGCAATGCCAACAGTCCGGTGATGCAGCCTACAGTGCGCTACGATCACTCCTGGAGCGCCTCGAGGACCCGGCTACCCGAACCGAAGCCCGGATCTTCCTGTCGGAGCTCCAGAAACGTTTCAGCTCTAAGGAAGACTCCGACCGCTGCCTCCGGACTTACCATTTCCAAATTCAGGACATTTACGTCGAGCAATATGAAGGTTACCAGAAGAGGAAGAAACTTACAATGATGGTGATACCCAG...

LOC131023667
ATGATGGTGATACCCAGTATCTTTATACCTGAGGATTGGTCCTTCACTTTTTACGAGGGGCTCAATAGGCACCCGGACTCCATTTTTAAGGACAGGACAGTAGCTGAACTTGGCTGTGGAAATGGATGGATATCCATTGCAATTGCAGAGAAGTGGTTACCGTCGAAGGTATATGGGCTTGATATCAATCCAAGAGCTGTGAAGATTTCCTGGATAAACCTATACTTGAATGCTCTAGATGGCAATGGCCAGCCAATTTA...

Protein

2 records

下载 Protein FASTA

XP_057809194.1
MEEFLEQCQQSGDAAYSALRSLLERLEDPATRTEARIFLSELQKRFSSKEDSDRCLRTYHFQIQDIYVEQYEGYQKRKKLTMMVIPSIFIPEDWSFTFYEGLNRHPDSIFKDRTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKISWINLYLNALDGNGQPIYDEENKTLLDRVEFYESDLLSYCRNNNIELERIVGCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISV...

XP_057809195.1
MMVIPSIFIPEDWSFTFYEGLNRHPDSIFKDRTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKISWINLYLNALDGNGQPIYDEENKTLLDRVEFYESDLLSYCRNNNIELERIVGCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPLGIMIFNMGGRPGQAVCERLFERRGLQVDKLWQTKVLQAADTDISALVEIEKNSPHRFEFFMGLSGDQPICARTAWAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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