当前解析结果
SmilChr04G001253| 统一新 Gene ID | SmilChr04G001253 |
|---|---|
| 名称 | SmilChr04G001253 |
| 描述 | BEACH domain-containing protein C2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 19781011 - 19801947 / + |
| NCBI Gene ID | LOC131023676 |
|---|---|
| GeneID | 131023676 |
| locus_tag | - |
| NCBI Name | LOC131023676 |
| 原始查询 | LOC131023676 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BEACH domain-containing protein C2 |
| 产物 | BEACH domain-containing protein C2 |
| Arabidopsis | AT2G45540 (AT2G45540)WD-40 repeat family protein / beige-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819162] identity=69; qcov=0.996; evalue=0; confidence=high |
| Rice | Os02g0663300 (OsWD40-48)- identity=55.3; qcov=0.747; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF02138 (Beach); PF14844 (PH_BEACH); PF15787 (DUF4704); PF20426 (NBCH_WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023676 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057809211.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057809211.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057809211.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057809211.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057809211.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:19782038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:19782061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:19782368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr4:19782407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr4:19782784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:19783108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:19783381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B73,C57 |
Chr4:19783429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C16,C62,D3 |
Chr4:19783487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:19783546 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B117 |
Chr4:19783546 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B117 |
Chr4:19783733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809211.1PF15787
DUF4704 675-979 aa
PF15787
DUF4704 1143-1281 aa
PF14844
PH_BEACH 2106-2203 aa
PF02138
Beach 2231-2507 aa
PF20426
NBCH_WD40 2628-2840 aa
PF00400
WD40 2663-2693 aa
PF00400
WD40 2739-2770 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809211.1 |
Pfam | PF15787 |
DUF4704 | Repeat | 675 | 979 | 1.4e-70 | 239.3 | Neurobeachin/BDCP, DUF4704 alpha solenoid region |
XP_057809211.1 |
Pfam | PF15787 |
DUF4704 | Repeat | 1143 | 1281 | 1.4e-70 | 239.3 | Neurobeachin/BDCP, DUF4704 alpha solenoid region |
XP_057809211.1 |
Pfam | PF14844 |
PH_BEACH | Domain | 2106 | 2203 | 1.5e-27 | 96.3 | PH domain associated with Beige/BEACH |
XP_057809211.1 |
Pfam | PF02138 |
Beach | Family | 2231 | 2507 | 5.1e-121 | 404.0 | Beige/BEACH domain |
XP_057809211.1 |
Pfam | PF20426 |
NBCH_WD40 | Repeat | 2628 | 2840 | 2.9e-20 | 73.1 | Neurobeachin beta propeller domain |
XP_057809211.1 |
Pfam | PF00400 |
WD40 | Repeat | 2663 | 2693 | 1.4e-12 | 48.2 | WD domain, G-beta repeat |
XP_057809211.1 |
Pfam | PF00400 |
WD40 | Repeat | 2739 | 2770 | 1.4e-12 | 48.2 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。