Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001225`

染色体: Chr04 坐标: 19160082-19170028 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001225`
名称	SmilChr04G001225
描述	zinc finger CCCH domain-containing protein 5
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	19160082 - 19170028 / `+`

ID 对照

NCBI Gene ID	`LOC131023677`
GeneID	`131023677`
locus_tag	`-`
NCBI Name	`LOC131023677`
原始查询	`LOC131023677`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 5
产物	zinc finger CCCH domain-containing protein 5
Arabidopsis	`AT1G10320` (AT1G10320) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:837571] identity=63.6; qcov=0.549; evalue=4.51e-174; confidence=medium
Rice	`Os02g0557500` (OsC3H16) - identity=48.7; qcov=0.258; evalue=1.68e-50; confidence=weak
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0005681 (spliceosomal complex); GO:0030628 (pre-mRNA 3'-splice site binding); GO:0046872 (metal ion binding); GO:0089701 (U2AF complex)
KEGG	-
Pfam	PF00076 (RRM_1); PF00642 (zf-CCCH)
InterPro	-
eggNOG	-
NR	GeneID:131023677

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809212.1`
2	Nuclear speckle	核斑点	0.60000	`XP_057809212.1`
3	Nucleoplasm	核质	0.40000	`XP_057809212.1`
4	Chromosome	染色体	0.00000	`XP_057809212.1`
5	Centromere	着丝粒	0.00000	`XP_057809212.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:19160281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:19160346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B66,C79,C80,D5
`Chr4:19161681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr4:19164143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,C84,D7
`Chr4:19166695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C16,C62
`Chr4:19168780`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B53
`Chr4:19168780`	`T`	`TG`	1bp_insertion	CDS_variant	1	B53
`Chr4:19168796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B24,C18,C2,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809212.1

727 aa

364

727

zf-CCCH

RRM_1

PF00642 zf-CCCH 216-236 aa PF00076 RRM_1 280-337 aa

XP_057809213.1

725 aa

362

725

zf-CCCH

RRM_1

PF00642 zf-CCCH 216-236 aa PF00076 RRM_1 280-337 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809212.1`	Pfam	`PF00642`	zf-CCCH	Family	216	236	2.8e-09	37.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057809212.1`	Pfam	`PF00076`	RRM_1	Domain	280	337	2e-05	25.1	RNA recognition motif
`XP_057809213.1`	Pfam	`PF00642`	zf-CCCH	Family	216	236	2.7e-09	37.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057809213.1`	Pfam	`PF00076`	RRM_1	Domain	280	337	2e-05	25.1	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953229.1
GGTTTTGGGAAGTGAGCGACTATAATCGAAAGATAACCACTTGAGGCAGCTGCTTATGGAAATTCCCCCAATTAACTCCAACTCAGGCCTTGATTTCTAGCGATCGACGAGATACAAGTCCAGAGCCGAAAATCATGATAGAAGAAGATGTTGATAATACCAACCATACTGGTACGGAGGCGGCGGAATGCGCGGCCGGGAAGCGGGAGAAGCGGCGGAAGGCAGTAAAGAAGGAGAAGAGGAAAAATAAAAGGAAAGAA...

XM_057953230.1
GGTTTTGGGAAGTGAGCGACTATAATCGAAAGATAACCACTTGAGGCAGCTGCTTATGGAAATTCCCCCAATTAACTCCAACTCAGGCCTTGATTTCTAGCGATCGACGAGATACAAGTCCAGAGCCGAAAATCATGATAGAAGAAGATGTTGATAATACCAACCATACTGGTACGGAGGCGGCGGAATGCGCGGCCGGGAAGCGGGAGAAGCGGCGGAAGGCAGTAAAGAAGGAGAAGAGGAAAAATAAAAGGAAAGAA...

CDS

2 records

下载 CDS FASTA

LOC131023677
ATGATAGAAGAAGATGTTGATAATACCAACCATACTGGTACGGAGGCGGCGGAATGCGCGGCCGGGAAGCGGGAGAAGCGGCGGAAGGCAGTAAAGAAGGAGAAGAGGAAAAATAAAAGGAAAGAAATGGCGGAGATGGCGCGCCGAGAGGAGGAGATTCGCCTCAATGATCCCGAGGAGCAGCGGCGGCTCCAAGCAGAGGAGGAGCAGGAGAGGTTGAGAGCCGAAGAGGAAAGGAGACACTTCGTGGAGATGGAGAG...

Protein

2 records

下载 Protein FASTA

XP_057809212.1
MIEEDVDNTNHTGTEAAECAAGKREKRRKAVKKEKRKNKRKEMAEMARREEEIRLNDPEEQRRLQAEEEQERLRAEEERRHFVEMERKILEEWEKKKALQEKEEEERRRRVEQEELLSKQNQVGHENEVDDDGWEYVEEGPSEIIWQGNEIIVKKKKIRVKKKDDQQIMKEDTNRPISNPLPPQSEAFTDHKTAQQLLDSVAQETPNFGTEQDKAHCPFHLKTGACRFGSRCSRIHFYPDKSCTLLIKSMYNGPGLAWEQ...

XP_057809213.1
MIEEDVDNTNHTGTEAAECAAGKREKRRKAVKKEKRKNKRKEMAEMARREEEIRLNDPEEQRRLQAEEEQERLRAEEERRHFVEMERKILEEWEKKKALQEKEEEERRRRVEQEELLSKQNQVGHENEVDDDGWEYVEEGPSEIIWQGNEIIVKKKKIRVKKKDDQQIMKEDTNRPISNPLPPQSEAFTDHKTAQQLLDSVAQETPNFGTEQDKAHCPFHLKTGACRFGSRCSRIHFYPDKSCTLLIKSMYNGPGLAWEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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