Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001246

染色体: Chr04 坐标: 19598630-19607667 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001246
名称SmilChr04G001246
描述uncharacterized SmilChr04G001246
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向19598630 - 19607667 / -

ID 对照

NCBI Gene IDLOC131023678
GeneID131023678
locus_tag-
NCBI NameLOC131023678
原始查询LOC131023678

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述Bax inhibitor-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:834759]; symbol=AT5G47130; hit=AT5G47130; species=arabidopsis; confidence=weak
产物Bax inhibitor-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:834759]; symbol=AT5G47130; hit=AT5G47130; species=arabidopsis; confidence=weak
ArabidopsisAT5G47130 (AT5G47130)
Bax inhibitor-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:834759]
identity=24.8; qcov=0.401; evalue=1.35e-11; confidence=weak
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131023678

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057809215.1
2 Endoplasmic reticulum 内质网 0.60000 XP_057809218.1
3 Vacuole 液泡 0.20000 XP_057809215.1
4 Nucleus membrane 核膜 0.20000 XP_057809218.1
5 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057809218.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:19598980 G A EMS_canonical_SNV stop_gained 5 A11,B24,B40,C28,C67
Chr4:19598980 G A EMS_canonical_SNV CDS_variant 5 A11,B24,B40,C28,C67
Chr4:19601202 G A EMS_canonical_SNV stop_gained 80 A11,A15,A19,A2,A20,A24,A5,A6,B100,B101,B103,B105,B106,B119,B12,B121,B127,B130,B133,B134,B135,B137,B138,B139,B15,B16,B17,B24,B26,B29,B32,B33,B38,B39,B40,B45,B47,B50,B52,B56,B57,B6,B64,B68,B85,B86,B88,B9,B94,B96,C1,C10,C12,C14,C22,C24,C25,C33,C34,C37,C38,C4,C40,C49,C51,C54,C56,C57,C60,C63,C64,C66,C70,C73,C74,C77,C8,C86,D1,D2
Chr4:19601220 C T EMS_canonical_SNV CDS_variant 2 B25,D7
Chr4:19601354 G A EMS_canonical_SNV CDS_variant 1 B75
Chr4:19601505 T TC 1bp_insertion frameshift_variant 24 A23,B102,B111,B126,B127,B128,B133,B140,B17,B23,B3,B33,B37,B51,B69,B86,C15,C16,C17,C27,C36,C45,C47,D4
Chr4:19601739 G A EMS_canonical_SNV CDS_variant 4 B101,B108,B27,C43
Chr4:19601786 G A EMS_canonical_SNV CDS_variant 3 C85,D10,D11
Chr4:19601943 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:19602089 C T EMS_canonical_SNV CDS_variant 2 C81,C82
Chr4:19602109 G A EMS_canonical_SNV CDS_variant 1 B104
Chr4:19603686 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057953231.1
TTAATTCTCAAAAAATGCTTTGTTTAATTAAGTGAATTGCCAGCATATTCTGGAACCAAAAATTTCGTGAAATGAAAATAAGAACTTTACACTGAAAATTCATCTCTCTCACGCAACTTCTCTCCTCTCTGAAGTCTCAACGTCTTCTTCTTCTCAGTTTTTCTTCCTTTTGCTACGCCGCTGCCTCACTTCCTCGGCGAAATCGCCGCCGGCCATCACCACCAACGTCCTTCTATCTCCCTCATAAACCTATTATTCAT...
XM_057953234.1
TCACAAAAACCGGTCTAATTCGCCAAACTAATTGAACCGCTTAAAGTGGAAGGGAAACACGTGTCTATTAAATCATAAGGGTGAAGCTCGTTGAGTTGTGCGCCTAAATATGGGGGACGAGATTATTAAAACCAGCTTTCCTTCCAGCCCAATTGCATATTCTCCATTCCCGATATACCCCTAAAAAAGTCCCAAAATAACCCTGACTGATTCTCGACGGCAAACGTTTCGAATATAAAGAGTCTCACACTCTGATAACT...

CDS

5 records

下载 CDS FASTA
LOC131023678
ATGAGGTTCACTGTGTTGGGGCGAATTGCTGTTCAAATTATGAAAAGTTACTTTCACGATCGGGATTGGAATGGTGATATGTTCAAGTTGGGAGATGTAAATGAATTTCACATGAGAGAGTTCTACGTTATACTGTTATCGGCTTCGATATTTTCTGGTATTGGATTGTTCGCAAATCCTACTGGGAAGGTCGAAAGCCTTTTCACTGCATGTGGTGCTGTTTTGAGTTTTATTATCGCCCACTGCACAAAGGCAGCGAC...
LOC131023678
ATGAGGTTCACTGTGTTGGGGCGAATTGCTGTTCAAATTATGAAAAGTTACTTTCACGATCGGGATTGGAATGGTGATATGTTCAAGTTGGGAGATGTAAATGAATTTCACATGAGAGAGTTCTACGTTATACTGTTATCGGCTTCGATATTTTCTGGTATTGGATTGTTCGCAAATCCTACTGGGAAGGTCGAAAGCCTTTTCACTGCATGTGGTGCTGTTTTGAGTTTTATTATCGCCCACTGCACAAAGGCAGCGAC...

Protein

5 records

下载 Protein FASTA
XP_057809214.1
MRFTVLGRIAVQIMKSYFHDRDWNGDMFKLGDVNEFHMREFYVILLSASIFSGIGLFANPTGKVESLFTACGAVLSFIIAHCTKAATKIERLLFFMLAVLLGWATATPWLSQLLDVDMGFVAAIILAHCVGFLAFYTSSSTMYYHFQFLYIEALANCTYTIFITLSVTTAFFGGNSDHLQAFRYLMWCMVYVVAYSQEVVVRSRREVGDYLMDAIWLYPSLPAFVVQLMKELWRILRWLVVILYKALEKMSFTVLGRIAV...
XP_057809215.1
MRFTVLGRIAVQIMKSYFHDRDWNGDMFKLGDVNEFHMREFYVILLSASIFSGIGLFANPTGKVESLFTACGAVLSFIIAHCTKAATKIERLLFFMLAVLLGWATATPWLSQLLDVDMGFVAAIILAHCVGFLAFYTSSSTMYYHFQFLYIEALANCTYTIFITLSVTTAFFGGNSDHLQAFRYLMWCMVYVVAYSQEVVVRSRREVGDYLMDAIWLYPSLPAFVVQLMKELWRILRWLVVILYKALEKMSFTVLGRIAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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