Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001229`

染色体: Chr04 坐标: 19330531-19337972 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001229`
名称	SmilChr04G001229
描述	uncharacterized SmilChr04G001229
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	19330531 - 19337972 / `+`

ID 对照

NCBI Gene ID	`LOC131023684`
GeneID	`131023684`
locus_tag	`-`
NCBI Name	`LOC131023684`
原始查询	`LOC131023684`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acyl-CoA [Source:NCBI gene (formerly Entrezgene);Acc:816871]; symbol=AT2G23390; hit=AT2G23390; species=arabidopsis; confidence=high
产物	acyl-CoA [Source:NCBI gene (formerly Entrezgene);Acc:816871]; symbol=AT2G23390; hit=AT2G23390; species=arabidopsis; confidence=high
Arabidopsis	`AT2G23390` (AT2G23390) acyl-CoA [Source:NCBI gene (formerly Entrezgene);Acc:816871] identity=69.3; qcov=0.923; evalue=0; confidence=high
Rice	`Os04g0442200` - identity=64.2; qcov=1.01; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF04339 (FemAB_like); PF13480 (Acetyltransf_6)
InterPro	-
eggNOG	-
NR	GeneID:131023684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057809224.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057809226.1`
3	Nucleus	细胞核	0.00000	`XP_057809224.1`
4	Chromosome	染色体	0.00000	`XP_057809224.1`
5	Centromere	着丝粒	0.00000	`XP_057809224.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:19333392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:19336912`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C6
`Chr4:19336912`	`TA`	`T`	1bp_deletion	CDS_variant	1	C6
`Chr4:19337860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809224.1

471 aa

236

471

FemAB_like

Acetyltransf_6

PF04339 FemAB_like 88-454 aa PF13480 Acetyltransf_6 276-410 aa

XP_057809225.1

469 aa

234

469

FemAB_like

Acetyltransf_6

PF04339 FemAB_like 86-448 aa PF13480 Acetyltransf_6 274-408 aa

XP_057809226.1

468 aa

234

468

FemAB_like

Acetyltransf_6

PF04339 FemAB_like 88-465 aa PF13480 Acetyltransf_6 276-410 aa

XP_057809227.1

468 aa

234

468

FemAB_like

Acetyltransf_6

PF04339 FemAB_like 88-465 aa PF13480 Acetyltransf_6 276-410 aa

XP_057809228.1

466 aa

233

466

FemAB_like

Acetyltransf_6

PF04339 FemAB_like 86-463 aa PF13480 Acetyltransf_6 274-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809224.1`	Pfam	`PF04339`	FemAB_like	Family	88	454	1.2e-150	502.5	Peptidogalycan biosysnthesis/recognition
`XP_057809224.1`	Pfam	`PF13480`	Acetyltransf_6	Domain	276	410	2.9e-12	47.6	Acetyltransferase (GNAT) domain
`XP_057809225.1`	Pfam	`PF04339`	FemAB_like	Family	86	448	1.9e-150	501.9	Peptidogalycan biosysnthesis/recognition
`XP_057809225.1`	Pfam	`PF13480`	Acetyltransf_6	Domain	274	408	3e-12	47.6	Acetyltransferase (GNAT) domain
`XP_057809226.1`	Pfam	`PF04339`	FemAB_like	Family	88	465	7.9e-154	513.0	Peptidogalycan biosysnthesis/recognition
`XP_057809226.1`	Pfam	`PF13480`	Acetyltransf_6	Domain	276	410	3e-12	47.6	Acetyltransferase (GNAT) domain
`XP_057809227.1`	Pfam	`PF04339`	FemAB_like	Family	88	465	7.9e-154	513.0	Peptidogalycan biosysnthesis/recognition
`XP_057809227.1`	Pfam	`PF13480`	Acetyltransf_6	Domain	276	410	3e-12	47.6	Acetyltransferase (GNAT) domain
`XP_057809228.1`	Pfam	`PF04339`	FemAB_like	Family	86	463	7.8e-154	513.0	Peptidogalycan biosysnthesis/recognition
`XP_057809228.1`	Pfam	`PF13480`	Acetyltransf_6	Domain	274	408	3e-12	47.6	Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057953241.1
GCATTCGTCTGACAGGTCATAGGAGTAACGGAAGAATAAAAAATTGAGGAGAGAAAGAAACAGAGCCAAACAGAAACACAAAAAGCCTGATCTTTTTGTGATGCCAGTTGCCATGGCTGTCGCCGTGGCTGCTTCTTCTCCATTTCTGGGCCACACCCTCAGGAAAACTTTATGTAGAAGGTGTGCCCCAAATTCAGATGTTGGGTTTAGCATAAAAGCCATATTTTGGGGACCAAGGAAGTCTGTTGAGCCCACCAAAC...

XM_057953242.1
GCATTCGTCTGACAGGTCATAGGAGTAACGGAAGAATAAAAAATTGAGGAGAGAAAGAAACAGAGCCAAACAGAAACACAAAAAGCCTGATCTTTTTGTGATGCCAGTTGCCATGGCTGTCGCCGTGGCTGCTTCTTCTCCATTTCTGGGCCACACCCTCAGGAAAACTTTATGTAGAAGGTGTGCCCCAAATTCAGATGTTGGGTTTAGCATAAAAGCCATATTTTGGGGACCAAGGAAGTCTGTTGAGCCCACCAAAC...

CDS

5 records

下载 CDS FASTA

LOC131023684
ATGCCAGTTGCCATGGCTGTCGCCGTGGCTGCTTCTTCTCCATTTCTGGGCCACACCCTCAGGAAAACTTTATGTAGAAGGTGTGCCCCAAATTCAGATGTTGGGTTTAGCATAAAAGCCATATTTTGGGGACCAAGGAAGTCTGTTGAGCCCACCAAACAAGAGCTATCCCTTGGAGACTTCAGTTTGCCAGAATTAAGGGTGGAGGGAGATAGAAGTAATGTTGACAAGGACAGAAAGCTATCAGTTCGAGTGGTTTC...

Protein

5 records

下载 Protein FASTA

XP_057809224.1
MPVAMAVAVAASSPFLGHTLRKTLCRRCAPNSDVGFSIKAIFWGPRKSVEPTKQELSLGDFSLPELRVEGDRSNVDKDRKLSVRVVSSISEILPHEWDACSVDAAGPEKFNPFLTHGFLSSLEETGCAVKETGWVPQHIVAQDDSDNVLGVIPLYLKSHSYGEYVFDHSWADAYYSYGSRYYPKLQCCVPFTPVTGPRILVRNTSYRDQVFDILVSALVALTIKFQVSSLHITFPSADEVGKLKEKGFLQRVGMQYHWKN...

XP_057809225.1
MPVAMAVAVAASSPFLGHTLRKTLCRRCAPNSDVGFSIKAIFWGPRKSVEPTKQELSLGDFSLPELRGDRSNVDKDRKLSVRVVSSISEILPHEWDACSVDAAGPEKFNPFLTHGFLSSLEETGCAVKETGWVPQHIVAQDDSDNVLGVIPLYLKSHSYGEYVFDHSWADAYYSYGSRYYPKLQCCVPFTPVTGPRILVRNTSYRDQVFDILVSALVALTIKFQVSSLHITFPSADEVGKLKEKGFLQRVGMQYHWKNHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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