当前解析结果
SmilChr04G001219| 统一新 Gene ID | SmilChr04G001219 |
|---|---|
| 名称 | SmilChr04G001219 |
| 描述 | uncharacterized SmilChr04G001219 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 19034375 - 19069557 / + |
| NCBI Gene ID | LOC131023687 |
|---|---|
| GeneID | 131023687 |
| locus_tag | - |
| NCBI Name | LOC131023687 |
| 原始查询 | LOC131023687 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585]; symbol=AT4G18530; hit=AT4G18530; species=arabidopsis; confidence=high |
| 产物 | lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585]; symbol=AT4G18530; hit=AT4G18530; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G18530 (AT4G18530)lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585] identity=55.5; qcov=0.967; evalue=9.92e-161; confidence=high |
| Rice | Os01g0919600- identity=54.1; qcov=0.812; evalue=6.54e-137; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05212 (DUF707) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023687 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057809235.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057809235.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057809235.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057809235.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057809235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:19036223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B56 |
Chr4:19036861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:19037180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr4:19037726 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr4:19037726 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B74 |
Chr4:19068704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C67 |
Chr4:19069126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B48,B76,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057809235.1PF05212
DUF707 93-407 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809235.1 |
Pfam | PF05212 |
DUF707 | Family | 93 | 407 | 1.3e-136 | 455.4 | Protein of unknown function (DUF707) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。