Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001894`

染色体: Chr04 坐标: 30915890-30924549 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001894`
名称	SmilChr04G001894
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	30915890 - 30924549 / `+`

ID 对照

NCBI Gene ID	`LOC131023741`
GeneID	`131023741`
locus_tag	`-`
NCBI Name	`LOC131023741`
原始查询	`LOC131023741`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
产物	short-chain dehydrogenase TIC 32%2C chloroplastic-like
Arabidopsis	`AT5G50130` (AT5G50130) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835078] identity=60.5; qcov=0.979; evalue=8.23e-136; confidence=high
Rice	`Os03g0115700` (OSJNBa0090O10.25) - identity=51.7; qcov=0.979; evalue=1.41e-95; confidence=high
GO	-
KEGG	-
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:131023741

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057809287.1`
2	Cytosol	细胞质基质	0.20000	`XP_057809287.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057809287.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057809287.1`
5	Nucleus	细胞核	0.00000	`XP_057809287.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:30916427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,C37,D10,D11
`Chr4:30916507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:30916516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr4:30916742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:30922545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:30922590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C37,D10
`Chr4:30922596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C37,D10
`Chr4:30922605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B7,C11,C69,D11
`Chr4:30922613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:30922634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809287.1

334 aa

167

334

adh_short

Epimerase

adh_short_C2

PF08659 KR 40-158 aa PF00106 adh_short 40-180 aa PF01370 Epimerase 42-225 aa PF13561 adh_short_C2 45-257 aa

XP_057809288.1

334 aa

167

334

adh_short

Epimerase

adh_short_C2

PF08659 KR 40-158 aa PF00106 adh_short 40-180 aa PF01370 Epimerase 42-225 aa PF13561 adh_short_C2 45-257 aa

XP_057809289.1

334 aa

167

334

adh_short

Epimerase

adh_short_C2

PF08659 KR 40-158 aa PF00106 adh_short 40-180 aa PF01370 Epimerase 42-225 aa PF13561 adh_short_C2 45-257 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809287.1`	Pfam	`PF08659`	KR	Family	40	158	3.2e-05	24.6	KR domain
`XP_057809287.1`	Pfam	`PF00106`	adh_short	Domain	40	180	1.7e-32	113.2	short chain dehydrogenase
`XP_057809287.1`	Pfam	`PF01370`	Epimerase	Family	42	225	5.1e-05	23.5	NAD dependent epimerase/dehydratase family
`XP_057809287.1`	Pfam	`PF13561`	adh_short_C2	Domain	45	257	1.3e-18	68.2	Enoyl-(Acyl carrier protein) reductase
`XP_057809288.1`	Pfam	`PF08659`	KR	Family	40	158	3.2e-05	24.6	KR domain
`XP_057809288.1`	Pfam	`PF00106`	adh_short	Domain	40	180	1.7e-32	113.2	short chain dehydrogenase
`XP_057809288.1`	Pfam	`PF01370`	Epimerase	Family	42	225	5.1e-05	23.5	NAD dependent epimerase/dehydratase family
`XP_057809288.1`	Pfam	`PF13561`	adh_short_C2	Domain	45	257	1.3e-18	68.2	Enoyl-(Acyl carrier protein) reductase
`XP_057809289.1`	Pfam	`PF08659`	KR	Family	40	158	3.2e-05	24.6	KR domain
`XP_057809289.1`	Pfam	`PF00106`	adh_short	Domain	40	180	1.7e-32	113.2	short chain dehydrogenase
`XP_057809289.1`	Pfam	`PF01370`	Epimerase	Family	42	225	5.1e-05	23.5	NAD dependent epimerase/dehydratase family
`XP_057809289.1`	Pfam	`PF13561`	adh_short_C2	Domain	45	257	1.3e-18	68.2	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057953304.1
GCGACAATTTTTAGAATGTTGGAGTTCAAGGTGAAAAATTCTGAGCCCAGAGATGATGGCTGCGTTGAAATATTTGGCAGGAATTGTTGGGCCAAGTGGCTATGGCTCCAAAACTACTGCTCAACAAGTTGCTGATGATTGCTTCTCCTCCATGCCTTCATCTCATCTCACTGCAATAGTCACTGGCGCGACGTCGGGGATCGGTAAAGAGACAGCAAGAGTGCTTGCCAAGGGAGGTGTGAGAGTGGTAATTCCAGCAA...

XM_057953306.1
GCGACAATTTTTAGAATGTTGGAGTTCAAGGTGAAAAATTCTGAGCCCAGAGATGATGGCTGCGTTGAAATATTTGGCAGGAATTGTTGGGCCAAGTGGCTATGGCTCCAAAACTACTGCTCAACAAGTTGCTGATGATTGCTTCTCCTCCATGCCTTCATCTCATCTCACTGCAATAGTCACTGGCGCGACGTCGGGGATCGGTAAAGAGACAGCAAGAGTGCTTGCCAAGGGAGGTGTGAGAGTGGTAATTCCAGCAA...

CDS

3 records

下载 CDS FASTA

LOC131023741
ATGATGGCTGCGTTGAAATATTTGGCAGGAATTGTTGGGCCAAGTGGCTATGGCTCCAAAACTACTGCTCAACAAGTTGCTGATGATTGCTTCTCCTCCATGCCTTCATCTCATCTCACTGCAATAGTCACTGGCGCGACGTCGGGGATCGGTAAAGAGACAGCAAGAGTGCTTGCCAAGGGAGGTGTGAGAGTGGTAATTCCAGCAATGGATTTGAGGGAGGGAGAAGGAGTCAAGGAAAGTATACAAAAAGAGAGCCC...

Protein

3 records

下载 Protein FASTA

XP_057809287.1
MMAALKYLAGIVGPSGYGSKTTAQQVADDCFSSMPSSHLTAIVTGATSGIGKETARVLAKGGVRVVIPAMDLREGEGVKESIQKESPEAEIIILELNLSSFASIKRFCSHFLSLGLPLHILINNAGIMSRQLEFSEDQIELTFATNYLGHFVLTEMLVGKMVETAAESCIEGRIVNVSSASHSWVDSKHFCFNELLHPKSYSIMKAYAQSKLAIILHARELSRQLKAKEANVTINAVHPGSIGTGIVKDFKVLHLLSGFL...

XP_057809288.1
MMAALKYLAGIVGPSGYGSKTTAQQVADDCFSSMPSSHLTAIVTGATSGIGKETARVLAKGGVRVVIPAMDLREGEGVKESIQKESPEAEIIILELNLSSFASIKRFCSHFLSLGLPLHILINNAGIMSRQLEFSEDQIELTFATNYLGHFVLTEMLVGKMVETAAESCIEGRIVNVSSASHSWVDSKHFCFNELLHPKSYSIMKAYAQSKLAIILHARELSRQLKAKEANVTINAVHPGSIGTGIVKDFKVLHLLSGFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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