Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002956

染色体: Chr04 坐标: 45904265-45908564 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002956
名称SmilChr04G002956
描述N-acylphosphatidylethanolamine synthase
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向45904265 - 45908564 / +

ID 对照

NCBI Gene IDLOC131023763
GeneID131023763
locus_tag-
NCBI NameLOC131023763
原始查询LOC131023763

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述N-acylphosphatidylethanolamine synthase
产物N-acylphosphatidylethanolamine synthase
ArabidopsisAT1G78690 (At1g78690p)
Phospholipid/glycerol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844205]
identity=64.1; qcov=0.995; evalue=7.08e-94; confidence=high
RiceOs04g0667000
-
identity=69; qcov=0.338; evalue=2.26e-33; confidence=low
GOGO:0006644 (phospholipid metabolic process); GO:0008374 (GO:0008374)
KEGGsmil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF01553 (Acyltransferase)
InterPro-
eggNOG-
NRGeneID:131023763

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057809324.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057809325.1
3 Mitochondrion outer membrane 线粒体外膜 0.80000 XP_057809325.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057809324.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057809326.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:45906032 C T EMS_canonical_SNV CDS_variant 4 B13,B26,B3,B67
Chr4:45907072 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:45908326 G A EMS_canonical_SNV CDS_variant 2 B104,B59
Chr4:45908355 G A EMS_canonical_SNV CDS_variant 2 B81,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057809324.1
285 aa
N
1
142
285
Acyltransferase
C
PF01553 Acyltransferase 53-180 aa
XP_057809325.1
278 aa
N
1
139
278
Acyltransferase
C
PF01553 Acyltransferase 53-180 aa
XP_057809326.1
210 aa
N
1
105
210
Acyltransferase
C
PF01553 Acyltransferase 21-112 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809324.1 Pfam PF01553 Acyltransferase Family 53 180 1.5e-16 61.1 Acyltransferase
XP_057809325.1 Pfam PF01553 Acyltransferase Family 53 180 1.4e-16 61.2 Acyltransferase
XP_057809326.1 Pfam PF01553 Acyltransferase Family 21 112 1.2e-10 42.0 Acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057953343.1
AAACAAATTGATTTAAAGAACTAATCCAAAAAAGAATACATCGATGAACCCAAATGTTAAAGAATACAAGTAAGAATCCCTAATGTAAACAGTATACCCATTATTGACGCCCAGGCGCCGCCGCTCTTCTTCTTCTTCTTCACTCTTGACGCAAATTTGCTCGCCCTTCTTTTCTTCACGTCCATTTCACAGACTGCTGGGGCAATCCCACCGCCGCACGAACAGCTCTGCCCTGCCTTCTCTGGAAGCAGCCGCACCAC...
XM_057953342.1
AAACAAATTGATTTAAAGAACTAATCCAAAAAAGAATACATCGATGAACCCAAATGTTAAAGAATACAAGTAAGAATCCCTAATGTAAACAGTATACCCATTATTGACGCCCAGGCGCCGCCGCTCTTCTTCTTCTTCTTCACTCTTGACGCAAATTTGCTCGCCCTTCTTTTCTTCACGTCCATTTCACAGACTGCTGGGGCAATCCCACCGCCGCACGAACAGCTCTGCCCTGCCTTCTCTGGAAGCAGCCGCACCAC...

CDS

3 records

下载 CDS FASTA
LOC131023763
ATGAGGACTATGGAGTGGGCGGCGAGAGGAGATCACCTACGCGGAGTACCTCGAAAGATGATTTTCATGGCGGTGGGAGCATTCGCCAAGGCTGTGGCCAATCTGCTTAACACCACCACCGTTTACAACGTCGAAACCCTCCTCCGCCTCGTCCGGCATCGCCCGCCTGGCGTCCCTCTTATCACCGTCAGCAATCACATGTCCACGTTGGATGACCCAGTATTGTGGGGATTCAAGGGTTTTCCCATAACGGATGTCGA...
LOC131023763
ATGAGGACTATGGAGTGGGCGGCGAGAGGAGATCACCTACGCGGAGTACCTCGAAAGATGATTTTCATGGCGGTGGGAGCATTCGCCAAGGCTGTGGCCAATCTGCTTAACACCACCACCGTTTACAACGTCGAAACCCTCCTCCGCCTCGTCCGGCATCGCCCGCCTGGCGTCCCTCTTATCACCGTCAGCAATCACATGTCCACGTTGGATGACCCAGTATTGTGGGGATTCAAGGGTTTTCCCATAACGGATGTCGA...

Protein

3 records

下载 Protein FASTA
XP_057809324.1
MRTMEWAARGDHLRGVPRKMIFMAVGAFAKAVANLLNTTTVYNVETLLRLVRHRPPGVPLITVSNHMSTLDDPVLWGFKGFPITDVELGRWVLAAEDICFKNPVYSYCFRLGKCIPITRGGGIYQEHMNEALDRLANGAWLHTFPEGKVYQEDAPIRRLKWGTASLIVRAPVTPIVLPIVHRGFEQLFVGVLQVMPENYMFGRRPPFPLGNKDIGIHIGEPIMFDIPKLKQEALHMSKDVSFSGCGWPNTVCGLDEAAQR...
XP_057809325.1
MRTMEWAARGDHLRGVPRKMIFMAVGAFAKAVANLLNTTTVYNVETLLRLVRHRPPGVPLITVSNHMSTLDDPVLWGFKGFPITDVELGRWVLAAEDICFKNPVYSYCFRLGKCIPITRGGGIYQEHMNEALDRLANGAWLHTFPEGKVYQEDAPIRRLKWGTASLIVRAPVTPIVLPIVHRGFEQVMPENYMFGRRPPFPLGNKDIGIHIGEPIMFDIPKLKQEALHMSKDVSFSGCGWPNTVCGLDEAAQRCLYINIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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